refactor: 0-based indexing in Model::z2event_ (#2964)

Get rid of 1-based event-indexing in `Model::z2event_` from ancient MATLAB times.


Related to #2727.

Author: dweindl

models/model_calvetti_py/Jy.cpp

@@ -1,10 +1,7 @@
 #include "amici/symbolic_functions.h"
 #include "amici/defines.h"
-#include "sundials/sundials_types.h"
 
-#include <gsl/gsl-lite.hpp>
 #include <algorithm>
-
 #include "k.h"
 #include "y.h"
 #include "sigmay.h"

models/model_calvetti_py/create_splines.cpp

@@ -1,10 +1,7 @@
 #include "amici/symbolic_functions.h"
 #include "amici/defines.h"
-#include "sundials/sundials_types.h"
 
-#include <gsl/gsl-lite.hpp>
 #include <algorithm>
-
 #include "amici/splinefunctions.h"
 #include <vector>
 #include "k.h"

models/model_calvetti_py/dJydsigma.cpp

@@ -1,10 +1,7 @@
 #include "amici/symbolic_functions.h"
 #include "amici/defines.h"
-#include "sundials/sundials_types.h"
 
-#include <gsl/gsl-lite.hpp>
 #include <algorithm>
-
 #include "k.h"
 #include "y.h"
 #include "sigmay.h"

models/model_calvetti_py/dJydy.cpp

@@ -51,11 +51,10 @@ void dJydy_rowvals_model_calvetti_py(SUNMatrixWrapper &dJydy, int index){
 
 #include "amici/symbolic_functions.h"
 #include "amici/defines.h"
-#include "sundials/sundials_types.h"
 
-#include <gsl/gsl-lite.hpp>
 #include <algorithm>
-
+#include <sundials/sundials_types.h>
+#include <gsl/gsl-lite.hpp>
 #include "k.h"
 #include "y.h"
 #include "sigmay.h"

models/model_calvetti_py/dwdw.cpp

@@ -41,11 +41,10 @@ void dwdw_rowvals_model_calvetti_py(SUNMatrixWrapper &dwdw){
 
 #include "amici/symbolic_functions.h"
 #include "amici/defines.h"
-#include "sundials/sundials_types.h"
 
-#include <gsl/gsl-lite.hpp>
 #include <algorithm>
-
+#include <sundials/sundials_types.h>
+#include <gsl/gsl-lite.hpp>
 #include "x.h"
 #include "k.h"
 #include "h.h"

models/model_calvetti_py/dwdx.cpp

@@ -41,11 +41,10 @@ void dwdx_rowvals_model_calvetti_py(SUNMatrixWrapper &dwdx){
 
 #include "amici/symbolic_functions.h"
 #include "amici/defines.h"
-#include "sundials/sundials_types.h"
 
-#include <gsl/gsl-lite.hpp>
 #include <algorithm>
-
+#include <sundials/sundials_types.h>
+#include <gsl/gsl-lite.hpp>
 #include "x.h"
 #include "k.h"
 #include "h.h"

models/model_calvetti_py/dxdotdw.cpp

@@ -41,11 +41,10 @@ void dxdotdw_rowvals_model_calvetti_py(SUNMatrixWrapper &dxdotdw){
 
 #include "amici/symbolic_functions.h"
 #include "amici/defines.h"
-#include "sundials/sundials_types.h"
 
-#include <gsl/gsl-lite.hpp>
 #include <algorithm>
-
+#include <sundials/sundials_types.h>
+#include <gsl/gsl-lite.hpp>
 #include "x.h"
 #include "k.h"
 #include "h.h"

models/model_calvetti_py/dxdotdx_explicit.cpp

@@ -41,11 +41,10 @@ void dxdotdx_explicit_rowvals_model_calvetti_py(SUNMatrixWrapper &dxdotdx_explic
 
 #include "amici/symbolic_functions.h"
 #include "amici/defines.h"
-#include "sundials/sundials_types.h"
 
-#include <gsl/gsl-lite.hpp>
 #include <algorithm>
-
+#include <sundials/sundials_types.h>
+#include <gsl/gsl-lite.hpp>
 #include "x.h"
 #include "k.h"
 #include "h.h"

models/model_calvetti_py/dydx.cpp

@@ -1,10 +1,7 @@
 #include "amici/symbolic_functions.h"
 #include "amici/defines.h"
-#include "sundials/sundials_types.h"
 
-#include <gsl/gsl-lite.hpp>
 #include <algorithm>
-
 #include "x.h"
 #include "k.h"
 #include "h.h"

models/model_calvetti_py/explicit_roots.cpp

@@ -1,10 +1,7 @@
 #include "amici/symbolic_functions.h"
 #include "amici/defines.h"
-#include "sundials/sundials_types.h"
 
-#include <gsl/gsl-lite.hpp>
 #include <algorithm>
-
 #include <vector>
 #include "k.h"