TimeCourse Implementation

[FFroehlich]

Overview of implementations to implement support for timecourse format in petab v2

• add additional AmiciExpDataVector-like data structure for timeseries (to be generated by petab library)
• add field to ExpData that specifies the ExpData for initialization
• provide additional overload for timeseries object in in

  AMICI/python/sdist/amici/swig_wrappers.py

  Line 76 in 7487607

  def runAmiciSimulations(

• add c++ implementation similar to

  AMICI/src/amici.cpp

  Line 266 in 7487607

  std::vector<std::unique_ptr<ReturnData>> runAmiciSimulations(

  (initially non-parallelized) that handles initialisation
• add testcase based on

  AMICI/python/tests/test_preequilibration.py

  Line 90 in 7487607

  def test_manual_preequilibration(preeq_fixture):