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Expose more optional parameters
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src/imcflibs/imagej/bdv.py

Lines changed: 8 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1598,11 +1598,13 @@ def fuse_dataset_bdvp(
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range_slices="",
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range_frames="",
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n_resolution_levels=5,
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use_lzw_compression=True,
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split_slices=False,
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split_channels=False,
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split_frames=False,
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override_z_ratio=False,
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z_ratio=1.0,
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use_interpolation=True,
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):
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"""Export a BigDataViewer project using the BIOP Kheops exporter.
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@@ -1626,6 +1628,8 @@ def fuse_dataset_bdvp(
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Frames to include in the export. Default is all frames.
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n_resolution_levels : int, optional
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Number of pyramid resolution levels to use for the export. Default is 5.
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use_lzw_compression : bool, optional
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If True, compressed the output file using LZW. Default is True.
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split_slices : bool, optional
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If True, splits the output into separate files for each slice. Default is False.
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split_channels : bool, optional
@@ -1636,6 +1640,8 @@ def fuse_dataset_bdvp(
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If True, overrides the default z_ratio value. Default is False.
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z_ratio : float, optional
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The z ratio to use for the export. Default is 1.0.
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use_interpolation : bool, optional
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If True, interpolates during fusion (takes ~4x longer). Default is True.
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Notes
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-----
@@ -1668,7 +1674,7 @@ def fuse_dataset_bdvp(
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"fusion_method",
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"SMOOTH AVERAGE",
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"use_lzw_compression",
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True,
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use_lzw_compression,
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"split_slices",
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split_slices,
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"split_channels",
@@ -1680,5 +1686,5 @@ def fuse_dataset_bdvp(
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"z_ratio",
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z_ratio,
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"use_interpolation",
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True,
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use_interpolation,
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)

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