You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Copy file name to clipboardExpand all lines: README.md
+26-3Lines changed: 26 additions & 3 deletions
Display the source diff
Display the rich diff
Original file line number
Diff line number
Diff line change
@@ -37,6 +37,29 @@ See `poetry run generate --help` for a full list of supported options.
37
37
38
38
## GitHub Action
39
39
40
-
The [Generate FlyBase BLAST Configuration](https://github.com/FlyBase/blast-db-configuration/actions/workflows/generate-blast-conf.yml) GitHub Action
41
-
can be used to generate the configuration. This workflow will generate a new configuration for the specified FlyBase
42
-
release and Dmel annotation and create a PR with the updated configuration file for review.
40
+
The GitHub action workflows described below do the following:
41
+
42
+
- Create or update a BLAST DB configuration file
43
+
- Create a PR with the resulting changes
44
+
- Pull the changes from FlyBase into the Alliance BLAST DB repo
45
+
- Create a PR for the Alliance to review and act on
46
+
47
+
48
+
### Procedure
49
+
50
+
#### Generate FlyBase Configuration
51
+
52
+
1. Visit the [Actions tab](https://github.com/FlyBase/blast-db-configuration/actions) for the repo.
53
+
2. Click on the [Generate FlyBase BLAST Configuration](https://github.com/FlyBase/blast-db-configuration/actions/workflows/generate-blast-conf.yml) workflow.
54
+
3. Click "Run workflow" and enter in the FlyBase release and Dmel annotation version number (e.g. FB2024_02 and r6.57).
55
+
4. After the workflow has run, there will be a pull request with the resulting configuration file. Review
56
+
the pull request changes and merge if all looks good.
57
+
58
+
#### Copy Configuration to the Alliance
59
+
60
+
1. Visit the [Actions tab](https://github.com/alliance-genome/agr_blast_service_configuration/actions) for the Alliance BLAST configurations.
61
+
2. Click on the [Update FlyBase Configuration](https://github.com/alliance-genome/agr_blast_service_configuration/actions/workflows/flybase.yml) workflow.
62
+
3. Click "Run workflow" and enter in the FlyBase release (e.g. FB2024_04). This is only used for the pull request text.
63
+
4. Review the pull request changes and follow the Alliance procedures.
0 commit comments