[Code cleanup] make options more hierarchical #213
Description
The current list of options is way too long to be understood by a user. I think a refactoring should be done where new objects are used to hierarchically define the parameters.
For example, rather than have 8 parameters passed flatly for the mutation weightings, you could have a single MutationWeights object that could be passed - and would have additional documentation on what the mutation weightings are.
I think it would make sense to start by writing down a hierarchical parameter grouping, and go from there.