Is your feature request related to a problem? Please describe.
Currently, image coordinates are passed as roi center in the spatial crop transforms. It would be nice to have the ability to pass physical coordinates as all the information required to generate the image coordinates exists in the metadata. This would allow using coordinates without worrying about things like spacing changes.
Describe the solution you'd like
I've got an implementation lying around in a custom package but would like if I can use just MONAI moving forward
https://github.com/AIM-Harvard/foundation-cancer-image-biomarker/blob/e447a6f69f5240b658f1a6e874bdbd4f4f45df99/fmcib/preprocessing/seed_based_crop.py#L121
Is your feature request related to a problem? Please describe.
Currently, image coordinates are passed as roi center in the spatial crop transforms. It would be nice to have the ability to pass physical coordinates as all the information required to generate the image coordinates exists in the metadata. This would allow using coordinates without worrying about things like spacing changes.
Describe the solution you'd like
I've got an implementation lying around in a custom package but would like if I can use just MONAI moving forward
https://github.com/AIM-Harvard/foundation-cancer-image-biomarker/blob/e447a6f69f5240b658f1a6e874bdbd4f4f45df99/fmcib/preprocessing/seed_based_crop.py#L121