Register database health check (#301)

* Register database health check

* Update dependency decisions


Signed-off-by: Victor Chang <[email protected]>

Author: mocsharp

doc/dependency_decisions.yml

@@ -523,23 +523,23 @@
   - :who: mocsharp
     :why: MIT (https://github.com/dotnet/aspnetcore/raw/main/LICENSE.txt)
     :versions:
-    - 6.0.10
     - 6.0.11
+    - 6.0.12
     :when: 2022-08-29 18:11:22.090772006 Z
 - - :approve
   - Microsoft.Extensions.Diagnostics.HealthChecks.Abstractions
   - :who: mocsharp
     :why: MIT (https://github.com/dotnet/aspnetcore/raw/main/LICENSE.txt)
     :versions:
-    - 6.0.10
     - 6.0.11
+    - 6.0.12
     :when: 2022-08-29 18:11:22.090772006 Z
 - - :approve
   - Microsoft.Extensions.Diagnostics.HealthChecks.EntityFrameworkCore
   - :who: mocsharp
     :why: MIT (https://github.com/dotnet/aspnetcore/raw/main/LICENSE.txt)
     :versions:
-    - 6.0.11
+    - 6.0.12
     :when: 2022-08-29 18:11:22.090772006 Z
 - - :approve
   - Microsoft.Extensions.FileProviders.Abstractions

docs/changelog.md

@@ -17,6 +17,12 @@
 
 # Changelog
 
+## 0.3.7
+
+[GitHub Milestone 0.3.7](https://github.com/Project-MONAI/monai-deploy-informatics-gateway/milestone/13)
+
+- Fixes database health checks not using the configured database.
+
 ## 0.3.6
 
 [GitHub Milestone 0.3.6](https://github.com/Project-MONAI/monai-deploy-informatics-gateway/milestone/12)
@@ -27,7 +33,7 @@
 
 ## 0.3.5
 
-[GitHub Milestone 0.3.6](https://github.com/Project-MONAI/monai-deploy-informatics-gateway/milestone/11)
+[GitHub Milestone 0.3.5](https://github.com/Project-MONAI/monai-deploy-informatics-gateway/milestone/11)
 
 - Integrates Monai.Deploy.Security to enable OpenID Connect for API authentication.
 - Records DICOM association information in the database.

docs/compliance/third-party-licenses.md

@@ -317,6 +317,225 @@ SOFTWARE.
 </details>
 
 
+<details>
+<summary>AspNetCore.HealthChecks.MongoDb 6.0.2</summary>
+
+## AspNetCore.HealthChecks.MongoDb
+
+- Version: 6.0.2
+- Authors: Xabaril Contributors
+- Project URL: https://github.com/Xabaril/AspNetCore.Diagnostics.HealthChecks
+- Source: [NuGet](https://www.nuget.org/packages/AspNetCore.HealthChecks.MongoDb/6.0.2)
+- License: [Apache-2.0](https://github.com/Xabaril/AspNetCore.Diagnostics.HealthChecks/raw/master/LICENSE)
+
+
+```
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+
+</details>
+
+
 <details>
 <summary>BoDi 1.5.0</summary>
 
@@ -4372,14 +4591,14 @@ SOFTWARE.
 
 
 <details>
-<summary>Microsoft.Extensions.Diagnostics.HealthChecks 6.0.11</summary>
+<summary>Microsoft.Extensions.Diagnostics.HealthChecks 6.0.12</summary>
 
 ## Microsoft.Extensions.Diagnostics.HealthChecks
 
-- Version: 6.0.11
+- Version: 6.0.12
 - Authors: Microsoft
 - Project URL: https://asp.net/
-- Source: [NuGet](https://www.nuget.org/packages/Microsoft.Extensions.Diagnostics.HealthChecks/6.0.11)
+- Source: [NuGet](https://www.nuget.org/packages/Microsoft.Extensions.Diagnostics.HealthChecks/6.0.12)
 - License: [MIT](https://github.com/dotnet/aspnetcore/raw/main/LICENSE.txt)
 
 
@@ -4454,14 +4673,14 @@ SOFTWARE.
 
 
 <details>
-<summary>Microsoft.Extensions.Diagnostics.HealthChecks.Abstractions 6.0.11</summary>
+<summary>Microsoft.Extensions.Diagnostics.HealthChecks.Abstractions 6.0.12</summary>
 
 ## Microsoft.Extensions.Diagnostics.HealthChecks.Abstractions
 
-- Version: 6.0.11
+- Version: 6.0.12
 - Authors: Microsoft
 - Project URL: https://asp.net/
-- Source: [NuGet](https://www.nuget.org/packages/Microsoft.Extensions.Diagnostics.HealthChecks.Abstractions/6.0.11)
+- Source: [NuGet](https://www.nuget.org/packages/Microsoft.Extensions.Diagnostics.HealthChecks.Abstractions/6.0.12)
 - License: [MIT](https://github.com/dotnet/aspnetcore/raw/main/LICENSE.txt)
 
 
@@ -4495,14 +4714,14 @@ SOFTWARE.
 
 
 <details>
-<summary>Microsoft.Extensions.Diagnostics.HealthChecks.EntityFrameworkCore 6.0.11</summary>
+<summary>Microsoft.Extensions.Diagnostics.HealthChecks.EntityFrameworkCore 6.0.12</summary>
 
 ## Microsoft.Extensions.Diagnostics.HealthChecks.EntityFrameworkCore
 
-- Version: 6.0.11
+- Version: 6.0.12
 - Authors: Microsoft
 - Project URL: https://asp.net/
-- Source: [NuGet](https://www.nuget.org/packages/Microsoft.Extensions.Diagnostics.HealthChecks.EntityFrameworkCore/6.0.11)
+- Source: [NuGet](https://www.nuget.org/packages/Microsoft.Extensions.Diagnostics.HealthChecks.EntityFrameworkCore/6.0.12)
 - License: [MIT](https://github.com/dotnet/aspnetcore/raw/main/LICENSE.txt)
 
 

src/Client/Test/packages.lock.json

@@ -389,28 +389,28 @@
       },
       "Microsoft.Extensions.Diagnostics.HealthChecks": {
         "type": "Transitive",
-        "resolved": "6.0.11",
-        "contentHash": "E6HxKQvrm0AeDagW6w+CsyVfXAO/pscrbX6mQ+XnThdwkeTxi0cnuXDTiTmd+WSmofSfpBKOS0VlvHUOxskdLQ==",
+        "resolved": "6.0.12",
+        "contentHash": "TdsjGYOHDg8656T2tWHUXNkYFUFstL/L9GEjboasuAetubH52yHkNpQV6WuqA6BpbfZHZj8xwKqN7aL7ZWO1Rg==",
         "dependencies": {
-          "Microsoft.Extensions.Diagnostics.HealthChecks.Abstractions": "6.0.11",
+          "Microsoft.Extensions.Diagnostics.HealthChecks.Abstractions": "6.0.12",
           "Microsoft.Extensions.Hosting.Abstractions": "6.0.0",
           "Microsoft.Extensions.Logging.Abstractions": "6.0.3",
           "Microsoft.Extensions.Options": "6.0.0"
         }
       },
       "Microsoft.Extensions.Diagnostics.HealthChecks.Abstractions": {
         "type": "Transitive",
-        "resolved": "6.0.11",
-        "contentHash": "MQS7GE1ux7Lo1yOr59M7ZTEoFY3GJ9hHkxXQnQc8EPxkt5S7cX4qe6djSWH+mk9qQan+AjFZzdC1x5Af5IaseA=="
+        "resolved": "6.0.12",
+        "contentHash": "7GN8C+pcaIBMDQA6OOgBEWT+1Y/OhZTxzovNXIxxBsfU4xI7bmjez5321ya5rN2NbJXUmStNnJics78RkPQO4w=="
       },
       "Microsoft.Extensions.Diagnostics.HealthChecks.EntityFrameworkCore": {
         "type": "Transitive",
-        "resolved": "6.0.11",
-        "contentHash": "tMjF1erFhHE+SnsiIyRIatVeKBgB9OfGsOvQe/+foE0xl4+JUQGbCA7gF1wqOksi9AxmGWzqtqjsMKJpCo5wYQ==",
+        "resolved": "6.0.12",
+        "contentHash": "TWtq9Hnjq8mTHbbe2JBLa5FR7wlxecFK/PjYQFWru+BVCWCXvRtscO/+S9/Dlz5XkgNzEfLwO9KvUqoh3EybtA==",
         "dependencies": {
-          "Microsoft.EntityFrameworkCore.Relational": "6.0.11",
-          "Microsoft.Extensions.Diagnostics.HealthChecks": "6.0.11",
-          "Microsoft.Extensions.Diagnostics.HealthChecks.Abstractions": "6.0.11"
+          "Microsoft.EntityFrameworkCore.Relational": "6.0.12",
+          "Microsoft.Extensions.Diagnostics.HealthChecks": "6.0.12",
+          "Microsoft.Extensions.Diagnostics.HealthChecks.Abstractions": "6.0.12"
         }
       },
       "Microsoft.Extensions.FileProviders.Abstractions": {
@@ -1751,7 +1751,7 @@
           "Microsoft.Extensions.Configuration": "6.0.1",
           "Microsoft.Extensions.Configuration.FileExtensions": "6.0.0",
           "Microsoft.Extensions.Configuration.Json": "6.0.0",
-          "Microsoft.Extensions.Diagnostics.HealthChecks.EntityFrameworkCore": "6.0.11",
+          "Microsoft.Extensions.Diagnostics.HealthChecks.EntityFrameworkCore": "6.0.12",
           "Microsoft.Extensions.Options.ConfigurationExtensions": "6.0.0",
           "Monai.Deploy.InformaticsGateway.Api": "1.0.0",
           "Monai.Deploy.InformaticsGateway.Configuration": "1.0.0",

src/Database/DatabaseManager.cs

@@ -21,7 +21,6 @@
 using Monai.Deploy.InformaticsGateway.Database.Api;
 using Monai.Deploy.InformaticsGateway.Database.Api.Repositories;
 using Monai.Deploy.InformaticsGateway.Database.EntityFramework;
-using Monai.Deploy.InformaticsGateway.Database.EntityFramework.Configuration;
 using Monai.Deploy.InformaticsGateway.Database.MongoDB;
 using Monai.Deploy.InformaticsGateway.Database.MongoDB.Configurations;
 using MongoDB.Driver;