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Signed-off-by: Daniël Nobbe <[email protected]>
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auto3dseg/README.md

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@@ -58,15 +58,15 @@ To further demonstrate the capabilities of **Auto3DSeg**, [here](./tasks/instanc
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## Running With Your Own Data
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To run Auto3DSeg on your own dataset, you need to build a `datalist.json` file for your dataset, and run the AutoRunner on it.
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To run Auto3DSeg on your own dataset, you need to build a `datalist.json` file, and pass it to the AutoRunner.
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The datalist format is based on the datasets released by the [Medical Segmentation Decathlon](http://medicaldecathlon.com).
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See the function `load_decathlon_datalist` in `monai/data/decathlon_datalist.py` for a description of the format.
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For the AutoRunner, we only need the `training` list in the JSON, it does not use any other fields.
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The `fold` key for each image is not required, as the AutoRunner will automatically create cross-validation folds.
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If you do add the cross-validation folds beforehand, these should align with the number of folds set in the configuration of the AutoRunner (by default 5, see [notebook](notebooks/auto_runner.ipynb)).
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Any other metadata, such as `modality`, `numTraining`, `name`, etc. will not be used by the AutoRunner, but we do recommend using metadata fields to keep track of names and versions of your dataset.
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The `fold` key for each image is not required, as the AutoRunner will automatically create cross-validation folds.
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If you do add the cross-validation folds beforehand, these should align with the number of folds set in the configuration of the AutoRunner (by default 5, see [notebook](notebooks/auto_runner.ipynb)).
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Any other metadata, such as `modality`, `numTraining`, `name`, etc. will not be used by the AutoRunner, but we do recommend using metadata fields to keep track of names and versions of your dataset.
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In short, your `datalist.json` file should look like this:
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```

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