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Ben Wilson
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unfinished CLI
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13 files changed

+481
-106
lines changed

13 files changed

+481
-106
lines changed

‎AlignMesh/AlignMesh.cxx

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@@ -55,7 +55,7 @@ int main (int argc, char * argv[])
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meshReader2->SetFileName(inputVolumeTwo.c_str());
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// meshReader->Update();
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MeshType::Pointer mesh2 = meshReader2->GetOutput();
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‎BordersOut/BordersOut.cxx

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#include "BordersOutCLP.h"
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//VTK Includes
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#include "vtkXMLPolyDataWriter.h"
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#include "vtkXMLPolyDataReader.h"
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#include "vtkSmartPointer.h"
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#include "vtkPolyData.h"
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#include "vtkTriangleFilter.h"
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#include "vtkNew.h"
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#include "vtkFeatureEdges.h"
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#include "vtkCleanPolyData.h"
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int main (int argc, char * argv[])
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{
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PARSE_ARGS;
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try{
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int NBorders;
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int TOTALBorders;
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vtkSmartPointer<vtkPolyData> polyData;
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// Read the file
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vtkNew<vtkXMLPolyDataReader> reader;
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reader->SetFileName(inputVolume.c_str());
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reader->Update();
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polyData = reader->GetOutput();
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vtkNew<vtkCleanPolyData> meshinC;
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meshinC->SetInputData(polyData);
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meshinC->Update();
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vtkNew<vtkFeatureEdges> boundaryEdges;
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boundaryEdges->SetInputData(meshinC->GetOutput());
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boundaryEdges->BoundaryEdgesOn();
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//boundaryEdges->FeatureEdgesOff();
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boundaryEdges->NonManifoldEdgesOff();
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boundaryEdges->ManifoldEdgesOff();
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boundaryEdges->Update();
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NBorders = (boundaryEdges->GetOutput()->GetNumberOfLines());
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TOTALBorders = NBorders;
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//std::cout << "Number of Border Edges... " << TOTALBorders << std::endl;
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//Write to file
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vtkNew<vtkXMLPolyDataWriter> writer;
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writer->SetFileName(outputVolume.c_str());
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writer->SetInputData(boundaryEdges->GetOutput());
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writer->Update();
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}
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catch (int e)
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{
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cout << "An exception occurred. Exception Nr. " << e << '\n';
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return EXIT_FAILURE;
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}
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return EXIT_SUCCESS;
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}

‎BordersOut/BordersOut.xml

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<?xml version="1.0" encoding="utf-8"?>
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<executable>
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<category>Surface Models.Advanced</category>
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<title>BordersOut</title>
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<description><![CDATA[This is a CLI module that can be bundled in an extension]]></description>
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<version>0.0.1</version>
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<documentation-url>http://www.example.com/Slicer/Modules/BordersOut</documentation-url>
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<license>Slicer</license>
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<contributor>Ben Wilson (Kitware)</contributor>
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<acknowledgements></acknowledgements>
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<parameters>
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<label>IO</label>
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<description><![CDATA[Input/output parameters]]></description>
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<geometry>
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<name>inputVolume</name>
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<label>Input Volume</label>
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<channel>input</channel>
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<index>0</index>
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<description><![CDATA[Input volume]]></description>
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</geometry>
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<geometry>
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<name>outputVolume</name>
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<label>Output Volume</label>
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<channel>output</channel>
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<index>1</index>
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<description><![CDATA[Output Volume]]></description>
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</geometry>
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</parameters>
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</executable>

‎BordersOut/CMakeLists.txt

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#-----------------------------------------------------------------------------
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set(MODULE_NAME BordersOut)
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#-----------------------------------------------------------------------------
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#
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# SlicerExecutionModel
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#
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find_package(SlicerExecutionModel REQUIRED)
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include(${SlicerExecutionModel_USE_FILE})
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#
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# ITK
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#
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set(${PROJECT_NAME}_ITK_COMPONENTS
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ITKIOImageBase
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ITKSmoothing
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)
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find_package(ITK 5 COMPONENTS ${${PROJECT_NAME}_ITK_COMPONENTS} REQUIRED)
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set(ITK_NO_IO_FACTORY_REGISTER_MANAGER 1) # See Libs/ITKFactoryRegistration/CMakeLists.txt
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include(${ITK_USE_FILE})
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#-----------------------------------------------------------------------------
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set(MODULE_INCLUDE_DIRECTORIES
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)
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set(MODULE_SRCS
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)
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set(MODULE_TARGET_LIBRARIES
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${ITK_LIBRARIES}
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${VTK_LIBRARIES}
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)
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#-----------------------------------------------------------------------------
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SEMMacroBuildCLI(
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NAME ${MODULE_NAME}
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TARGET_LIBRARIES ${MODULE_TARGET_LIBRARIES}
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INCLUDE_DIRECTORIES ${MODULE_INCLUDE_DIRECTORIES}
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ADDITIONAL_SRCS ${MODULE_SRCS}
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)
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#-----------------------------------------------------------------------------
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if(BUILD_TESTING)
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add_subdirectory(Testing)
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endif()

‎BordersOut/Data/Baseline/BordersOutTest.nhdr.md5

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‎BordersOut/Data/Baseline/BordersOutTest.raw.md5

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‎BordersOut/Data/Input/CTHeadAxial.nhdr.md5

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6e5c289c73e14ba7a1b0f8aaf6ed249a

‎BordersOut/Data/Input/CTHeadAxial.raw.gz.md5

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3ebd710c9cf9d75750f4569b8caf6d07

‎BordersOut/Testing/CMakeLists.txt

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add_subdirectory(Cxx)

‎BordersOut/Testing/Cxx/BordersOutTest.cxx

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#if defined(_MSC_VER)
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#pragma warning ( disable : 4786 )
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#endif
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#ifdef __BORLANDC__
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#define ITK_LEAN_AND_MEAN
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#endif
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#include "itkTestMain.h"
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// STD includes
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#include <iostream>
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#ifdef WIN32
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# define MODULE_IMPORT __declspec(dllimport)
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#else
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# define MODULE_IMPORT
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#endif
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extern "C" MODULE_IMPORT int ModuleEntryPoint(int, char* []);
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void RegisterTests()
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{
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StringToTestFunctionMap["ModuleEntryPoint"] = ModuleEntryPoint;
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}

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