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@@ -30,10 +30,10 @@ The **Aignostics Python SDK** includes multiple pathways to interact with the
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View your results by launching popular tools such as [QuPath](https://qupath.github.io/) and Python Notebooks with one click.
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The app runs on Mac OS X, Windows, and Linux.
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2. Use the **Aignostics Command-line interface (CLI)** to run applications directly from your terminal or shell scripts.
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THe CLI lets you query public datasets from the [NCI Image Data Commons (IDC)](https://portal.imaging.datacommons.cancer.gov/),
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The CLI lets you query public datasets from the [NCI Image Data Commons (IDC)](https://portal.imaging.datacommons.cancer.gov/),
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process both public and private whole slide images, and easily download results. The CLI is available for Mac OS X, Windows, and Linux.
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3. Use the included **example notebooks** as starting points to run applications
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directly from your preferred notebook environment. We support Marimo and Jupyter based notebooks environments including Google Collab.
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directly from your preferred notebook environment. We support Marimo and Jupyter based notebooks environments including Google Colab.
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4. Use the **Aignostics Client Library** to seamlessly integrate the Aignostics Platform with your enterprise image management systems and scientific workflows.
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The client provides a simple way to access the Aignostics Platform API from your Python codebase. We support Python 3.11 and above.
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@@ -52,7 +52,7 @@ all releases, (3) achieving
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with
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[active scanning of dependencies](https://github.com/aignostics/python-sdk/issues/4),
> See as follows for a quick start guide to get you up and running with the Aignostics Python SDK as quickly as possible.
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> If you first want to learn bout the basic concepts and components of the Aignostics Platform skip to that section below.
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> If you first want to learn about the basic concepts and components of the Aignostics Platform skip to that section below.
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> The further reading section points you to reference documentation listing all available CLI commands, methods and classes provided by the client library, operations of the API, how we achieve operational excellence, security, and more.
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> If you are not familiar with terminology please check the glossary at the end of this document.
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uvx aignostics application run result download APPLICATION_RUN_ID
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```
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For convenience the the `application run execute` command combines preparation, upload, submission and download.
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For convenience the `application run execute` command combines preparation, upload, submission and download.
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The below is equivalent to the above, while adding additionally required metadata using a mapping:
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```shell
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> 1. All user accounts must be associated with your organization's official domain. We do not support the registration of private or personal email addresses.
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> 2. For security, Two-Factor Authentication (2FA) is mandatory for all user accounts.
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> 3. We can integrate with your IDP system (e.g. SAML, OIDC) for user authentication. Please contact us to discuss the integration.
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> 4. Registering your organistation typically takes 2 business days depending on the complexity of the signed business agreement and specific requirements.
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> 4. Registering your organisation typically takes 2 business days depending on the complexity of the signed business agreement and specific requirements.
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### Console
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The web-based [*Aignostics Console*](https://platform.aignostics.com) is a user-friendly interface that allows you to
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manage your organization, applications, quotas, and users registered with the Aignostics Platform.
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1. The Console is available to users registered for your organisation to manage their profile and monitor usage of their quota.
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2. Administrators of your organization can invite additional users, manage the organisation and userspecific quotas and monitor usage.
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2. Administrators of your organization can invite additional users, manage the organisation and user-specific quotas and monitor usage.
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