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Co-Authored-By: tiagofilipe12 <[email protected]>

Author: ODiogoSilva

changelog.md

@@ -31,7 +31,7 @@ resolution
 - Added seed parameter to `downsample_fastq` component.
 - Added bacmet database to `abricate` component.
 - Added default docker option to avoid docker permission errors.
-- Added tests for `mash_screen`, `mash_dist`, `mapping_patlas` related python 
+- Added tests for `mash_screen`, `mash_dist`, `mapping_patlas` python 
 templates
 - Changed the default URL generated by inspect and report commands. 
 

flowcraft/tests/template_tests/test_mapping2json.py

@@ -61,7 +61,7 @@ def test_depth_file_reader(tmpdir):
     """
 
     # create a temporary file to make a dict from
-    file = tmpdir.join("test_depth_file.txt")
+    file_handle = tmpdir.join("test_depth_file.txt")
     file.write("seq1\t1\t30")
 
     # execute the function to get the dict