File tree Expand file tree Collapse file tree 1 file changed +1
-1
lines changed Expand file tree Collapse file tree 1 file changed +1
-1
lines changed Original file line number Diff line number Diff line change @@ -4,7 +4,7 @@ description: A Bactopia Tool which uses GenoTyphi to genotype Salmonella Typhi f
44---
55# Bactopia Tool - ` genotyphi `
66The ` genotyphi ` module uses [ GenoTyphi] ( https://github.com/typhoidgenomics/genotyphi ) to
7- call Typhi lineages, AMR determines and plasmid markers in Salmonella Typhi samples.
7+ call Typhi lineages, AMR determinants, and plasmid markers in Salmonella Typhi samples.
88Samples are first processed by [ Mykrobe] ( https://github.com/Mykrobe-tools/mykrobe ) using ` mykrobe predict `
99with ` typhi ` specified as the species. Then the Mykrobe results are then processed by the
1010[ parse_typhi_mykrobe.py] ( https://github.com/typhoidgenomics/genotyphi/blob/main/typhimykrobe/parse_typhi_mykrobe.py )
You can’t perform that action at this time.
0 commit comments