From 1ec16753a8cf556561fb0ce62f3195dab14ac548 Mon Sep 17 00:00:00 2001 From: vivekbhr Date: Wed, 16 Jul 2025 16:30:23 +0200 Subject: [PATCH 1/2] np.warnings is deprecated --- deeptools/computeMatrixOperations.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/deeptools/computeMatrixOperations.py b/deeptools/computeMatrixOperations.py index 0224f00a39..aca60e7024 100755 --- a/deeptools/computeMatrixOperations.py +++ b/deeptools/computeMatrixOperations.py @@ -7,7 +7,7 @@ import os import csv from importlib.metadata import version - +import warnings def parse_arguments(): parser = argparse.ArgumentParser( @@ -427,7 +427,7 @@ def filterHeatmapValues(hm, minVal, maxVal): minVal = -np.inf if maxVal is None: maxVal = np.inf - np.warnings.filterwarnings('ignore') + warnings.filterwarnings('ignore') for i, (x, y) in enumerate(zip(np.nanmin(hm.matrix.matrix, axis=1), np.nanmax(hm.matrix.matrix, axis=1))): # x/y will be nan iff a row is entirely nan. Don't filter. if np.isnan(x) or (x >= minVal and y <= maxVal): From b2e9ec47655752dd005b60226966b0051ea2adea Mon Sep 17 00:00:00 2001 From: vivekbhr Date: Wed, 16 Jul 2025 16:38:03 +0200 Subject: [PATCH 2/2] pep8 --- deeptools/computeMatrixOperations.py | 1 + 1 file changed, 1 insertion(+) diff --git a/deeptools/computeMatrixOperations.py b/deeptools/computeMatrixOperations.py index aca60e7024..8e03070521 100755 --- a/deeptools/computeMatrixOperations.py +++ b/deeptools/computeMatrixOperations.py @@ -9,6 +9,7 @@ from importlib.metadata import version import warnings + def parse_arguments(): parser = argparse.ArgumentParser( formatter_class=argparse.RawDescriptionHelpFormatter,