Skip to content

Commit abc5fb4

Browse files
authored
Merge pull request #5 from fercer/dev-content
Updated package versions and download links for test images
2 parents cae555d + 21af61d commit abc5fb4

File tree

4 files changed

+695
-176
lines changed

4 files changed

+695
-176
lines changed

README.md

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -24,7 +24,7 @@ Install the following packages in the newly created environment.
2424
```
2525
conda activate scale-up
2626
27-
conda install -c conda-forge "cellpose>=3.0,<4.0" tifffile=2025.6.11 "zarr>=2.0,<3.0" dask=2025.5.1 distributed=2025.5.1 dask-image=2024.5.3 imagecodecs=2025.3.30
27+
conda install -c conda-forge "cellpose>=3.0,<4.0" tifffile<2025.6.11 "zarr>=2.0,<3.0" dask=2025.5.1 distributed=2025.5.1 dask-image=2024.5.3 imagecodecs=2025.3.30
2828
```
2929

3030
We'll open some image files that are compressed using `JPEG2000`, so we need `imagecodecs` to have access to this compression algorithm.
@@ -42,4 +42,4 @@ So it is a good idea to have it downloaded as well.
4242

4343
A crop of that image can be found [here](https://drive.google.com/file/d/17owNcq_Or6aBAyUVE33fyHSS0VvKuHSw/view?usp=sharing), along with its `Zarr` version [here](https://drive.google.com/file/d/1BmNxOrO3vOFPR-PCnV00DYgFsD1sDu47/view?usp=sharing).
4444

45-
A smaller example image can be found [here](https://openslide.cs.cmu.edu/download/openslide-testdata/Aperio/CMU-1-Small-Region.svs), and its corresponding `Zarr` version is [here](https://drive.google.com/file/d/1MifgafB5mhVAvqjzEAAR_zQajAU5Dcya/view?usp=drive_link).
45+
A smaller example image can be found [here](https://openslide.cs.cmu.edu/download/openslide-testdata/Aperio/CMU-1-Small-Region.svs), and its corresponding `Zarr` version [here](https://drive.google.com/file/d/1MifgafB5mhVAvqjzEAAR_zQajAU5Dcya/view?usp=drive_link).

0 commit comments

Comments
 (0)