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lines changed Original file line number Diff line number Diff line change @@ -16,9 +16,8 @@ DeepVariant supports germline variant-calling in diploid organisms.
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* NGS (Illumina or Element) data for either a
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[ whole genome] ( docs/deepvariant-case-study.md ) or
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[ whole exome] ( docs/deepvariant-exome-case-study.md ) .
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- * PacBio HiFi data, see the
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+ * PacBio HiFi data
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[ PacBio case study] ( docs/deepvariant-pacbio-model-case-study.md ) .
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- * PacBio [ Iso-Seq/MAS-Seq case study] ( docs/deepvariant-masseq-case-study.md ) .
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* Oxford Nanopore R10.4.1
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[ Simplex case study] ( docs/deepvariant-ont-r104-simplex-case-study.md ) ,
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[ Duplex case study] ( docs/deepvariant-ont-r104-duplex-case-study.md ) .
@@ -27,7 +26,9 @@ DeepVariant supports germline variant-calling in diploid organisms.
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[ G400 case study] ( docs/deepvariant-complete-g400-case-study.md ) .
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* Pangenome-mapping-based case-study:
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[ vg case study] ( docs/deepvariant-vg-case-study.md ) .
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- * Illumina [ RNA-seq Case Study] ( docs/deepvariant-rnaseq-case-study.md ) .
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+ * RNA data for
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+ [ PacBio Iso-Seq/MAS-Seq case study] ( docs/deepvariant-masseq-case-study.md )
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+ and [ Illumina RNA-seq Case Study] ( docs/deepvariant-rnaseq-case-study.md ) .
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* Hybrid PacBio HiFi + Illumina WGS, see the
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[ hybrid case study] ( docs/deepvariant-hybrid-case-study.md ) .
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