From 26331579142bf3108d9b1a0c0fe1c05ea176f1fa Mon Sep 17 00:00:00 2001 From: Ben Perlmutter Date: Wed, 6 Aug 2025 12:24:43 -0400 Subject: [PATCH 1/5] dataset python script --- packages/datasets/.env.example | 3 +- packages/datasets/.gitignore | 3 +- packages/datasets/.python-version | 1 + .../datasets/mongodb_datasets/__init__.py | 3 + packages/datasets/mongodb_datasets/config.py | 17 + .../mongodb_datasets/import_wikipedia.py | 235 ++++ packages/datasets/pyproject.toml | 25 + packages/datasets/uv.lock | 1170 +++++++++++++++++ 8 files changed, 1455 insertions(+), 2 deletions(-) create mode 100644 packages/datasets/.python-version create mode 100644 packages/datasets/mongodb_datasets/__init__.py create mode 100644 packages/datasets/mongodb_datasets/config.py create mode 100644 packages/datasets/mongodb_datasets/import_wikipedia.py create mode 100644 packages/datasets/pyproject.toml create mode 100644 packages/datasets/uv.lock diff --git a/packages/datasets/.env.example b/packages/datasets/.env.example index 6c38cd346..34b7ec574 100644 --- a/packages/datasets/.env.example +++ b/packages/datasets/.env.example @@ -9,4 +9,5 @@ HUGGINGFACE_DOCS_CONTENT_REPO="someuser/some-repo" HUGGINGFACE_DOCS_CODE_EXAMPLE_REPO="someuser/some-repo" MONGODB_CONNECTION_URI="..." MONGODB_DATABASE_NAME="docs-chatbot-dev" -MONGODB_TEXT_TO_CODE_CONNECTION_URI="..." \ No newline at end of file +MONGODB_TEXT_TO_CODE_CONNECTION_URI="..." +MONGODB_ATLAS_SEARCH_CONNECTION_URI="..." \ No newline at end of file diff --git a/packages/datasets/.gitignore b/packages/datasets/.gitignore index 1f1c57c9b..1e54d6d02 100644 --- a/packages/datasets/.gitignore +++ b/packages/datasets/.gitignore @@ -1 +1,2 @@ -dataOut/ \ No newline at end of file +dataOut/ +__pycache__/ \ No newline at end of file diff --git a/packages/datasets/.python-version b/packages/datasets/.python-version new file mode 100644 index 000000000..2c0733315 --- /dev/null +++ b/packages/datasets/.python-version @@ -0,0 +1 @@ +3.11 diff --git a/packages/datasets/mongodb_datasets/__init__.py b/packages/datasets/mongodb_datasets/__init__.py new file mode 100644 index 000000000..288ab3511 --- /dev/null +++ b/packages/datasets/mongodb_datasets/__init__.py @@ -0,0 +1,3 @@ +"""MongoDB Datasets - Utilities for importing datasets into MongoDB.""" + +__version__ = "0.1.0" \ No newline at end of file diff --git a/packages/datasets/mongodb_datasets/config.py b/packages/datasets/mongodb_datasets/config.py new file mode 100644 index 000000000..c77d7fd59 --- /dev/null +++ b/packages/datasets/mongodb_datasets/config.py @@ -0,0 +1,17 @@ +"""Configuration utilities for mongodb_datasets package.""" + +from pathlib import Path +from dotenv import load_dotenv + +# Find the project root .env file by traversing up from this file +# Structure: packages/datasets/mongodb_datasets/config.py -> ../../../.env +PROJECT_ROOT = Path(__file__).parent.parent.parent.parent.parent +ENV_PATH = PROJECT_ROOT / ".env" + +def load_environment() -> None: + """Load environment variables from the project .env file.""" + if ENV_PATH.exists(): + load_dotenv(ENV_PATH) + else: + # Fallback to loading from current directory + load_dotenv() \ No newline at end of file diff --git a/packages/datasets/mongodb_datasets/import_wikipedia.py b/packages/datasets/mongodb_datasets/import_wikipedia.py new file mode 100644 index 000000000..696b28d68 --- /dev/null +++ b/packages/datasets/mongodb_datasets/import_wikipedia.py @@ -0,0 +1,235 @@ +#!/usr/bin/env python3 +""" +Import Wikipedia dataset from HuggingFace to MongoDB + +This script downloads the Simple English Wikipedia dataset from HuggingFace +and imports it into MongoDB with proper batching and error handling. +""" + +import os +import sys +import logging +from typing import Dict, Any, Optional +from pymongo import MongoClient +from pymongo.collection import Collection +from pymongo.errors import BulkWriteError +from datasets import load_dataset +from datasets.arrow_dataset import Dataset + +from .config import load_environment + +# Load environment variables +load_environment() + +# Configure logging +logging.basicConfig( + level=logging.INFO, + format='{"level":"%(levelname)s","message":"%(message)s"}' +) +logger = logging.getLogger(__name__) + +# Configuration +BATCH_SIZE = 1000 +MAX_DOCUMENTS = None # Set to None for full dataset +DATABASE_NAME = "wikipedia_dataset" +COLLECTION_NAME = "articles" + +# MongoDB document size limit (16MB) with safety margin +MAX_TEXT_SIZE = 15 * 1024 * 1024 # 15MB + + +class WikipediaImporter: + """Handles importing Wikipedia dataset from HuggingFace to MongoDB.""" + + def __init__(self, connection_uri: str): + self.client = MongoClient(connection_uri) + self.db = self.client[DATABASE_NAME] + self.collection: Collection = self.db[COLLECTION_NAME] + self.stats = { + "processed": 0, + "inserted": 0, + "skipped_oversized": 0, + "skipped_duplicates": 0, + "errors": 0 + } + + def setup_indexes(self) -> None: + """Create necessary indexes for performance and uniqueness.""" + try: + self.collection.create_index("id", unique=True, background=True) + logger.info("Created unique index on 'id' field") + except Exception as error: + logger.warning(f"Index creation failed (may already exist): {error}") + + def load_wikipedia_dataset(self) -> Dataset: + """Load the Wikipedia dataset from HuggingFace.""" + logger.info("Loading Wikipedia dataset from HuggingFace...") + + try: + # Load the Simple English Wikipedia dataset + dataset = load_dataset( + "wikimedia/wikipedia", + "20231101.simple", + split="train", + streaming=False # Load full dataset for better performance + ) + + logger.info(f"Dataset loaded successfully. Total records: {len(dataset)}") + return dataset + + except Exception as error: + logger.error(f"Failed to load dataset: {error}") + raise + + def process_record(self, record: Dict[str, Any]) -> Optional[Dict[str, Any]]: + """Process a single Wikipedia record.""" + try: + # Extract and validate fields + article_id = str(record.get("id", "")) + url = str(record.get("url", "")) + title = str(record.get("title", "")) + text = str(record.get("text", "")) + + # Skip articles with oversized text + text_size = len(text.encode('utf-8')) + if text_size > MAX_TEXT_SIZE: + logger.warning(f"Skipping article {article_id} - text too large ({text_size // 1024 // 1024}MB)") + self.stats["skipped_oversized"] += 1 + return None + + # Create MongoDB document + document = { + "id": article_id, + "url": url, + "title": title, + "text": text + } + + return document + + except Exception as error: + logger.warning(f"Error processing record: {error}") + self.stats["errors"] += 1 + return None + + def insert_batch(self, batch: list) -> int: + """Insert a batch of documents into MongoDB.""" + if not batch: + return 0 + + try: + result = self.collection.insert_many(batch, ordered=False) + inserted_count = len(result.inserted_ids) + logger.info(f"Inserted {inserted_count} documents to {DATABASE_NAME}.{COLLECTION_NAME}") + return inserted_count + + except BulkWriteError as error: + # Handle partial success with duplicate key errors + inserted_count = error.details.get('nInserted', 0) + duplicate_errors = [e for e in error.details.get('writeErrors', []) if e.get('code') == 11000] + other_errors = [e for e in error.details.get('writeErrors', []) if e.get('code') != 11000] + + if duplicate_errors: + logger.info(f"Inserted {inserted_count} documents, skipped {len(duplicate_errors)} duplicates") + self.stats["skipped_duplicates"] += len(duplicate_errors) + + if other_errors: + logger.warning(f"Encountered {len(other_errors)} other errors during batch insert") + self.stats["errors"] += len(other_errors) + + return inserted_count + + except Exception as error: + logger.error(f"Failed to insert batch: {error}") + self.stats["errors"] += len(batch) + return 0 + + def import_dataset(self, max_documents: Optional[int] = None) -> None: + """Import the Wikipedia dataset to MongoDB.""" + logger.info(f"Starting Wikipedia dataset import to {DATABASE_NAME}.{COLLECTION_NAME}") + + # Setup database + self.setup_indexes() + + # Load dataset + dataset = self.load_wikipedia_dataset() + + # Process in batches + batch = [] + total_processed = 0 + + # Limit dataset if specified + if max_documents: + dataset = dataset.select(range(min(max_documents, len(dataset)))) + logger.info(f"Limited dataset to {len(dataset)} documents for testing") + + for record in dataset: + if max_documents and total_processed >= max_documents: + break + + processed_record = self.process_record(record) + if processed_record: + batch.append(processed_record) + + total_processed += 1 + self.stats["processed"] = total_processed + + # Insert batch when it reaches the batch size + if len(batch) >= BATCH_SIZE: + inserted = self.insert_batch(batch) + self.stats["inserted"] += inserted + batch = [] + + # Progress logging + if total_processed % 5000 == 0: + logger.info(f"Processed {total_processed} records...") + + # Insert remaining batch + if batch: + inserted = self.insert_batch(batch) + self.stats["inserted"] += inserted + + # Final statistics + logger.info(f"Import completed. Stats: {self.stats}") + + def close(self) -> None: + """Close the database connection.""" + self.client.close() + logger.info("MongoDB connection closed") + + +def main() -> None: + """Main entry point.""" + # Get MongoDB connection string from environment + connection_uri = os.getenv("MONGODB_ATLAS_SEARCH_CONNECTION_URI") + if not connection_uri: + logger.error("MONGODB_ATLAS_SEARCH_CONNECTION_URI environment variable is required") + logger.error("Please set it in your .env file or export it directly") + sys.exit(1) + + importer = None + try: + # Initialize importer + importer = WikipediaImporter(connection_uri) + logger.info("Connected to MongoDB") + + # Import dataset + importer.import_dataset(max_documents=MAX_DOCUMENTS) + + logger.info("Wikipedia dataset import completed successfully") + + except KeyboardInterrupt: + logger.info("Import interrupted by user") + sys.exit(0) + + except Exception as error: + logger.error(f"Import failed: {error}") + sys.exit(1) + + finally: + if importer: + importer.close() + + +if __name__ == "__main__": + main() \ No newline at end of file diff --git a/packages/datasets/pyproject.toml b/packages/datasets/pyproject.toml new file mode 100644 index 000000000..ff6e4f4ea --- /dev/null +++ b/packages/datasets/pyproject.toml @@ -0,0 +1,25 @@ +[project] +name = "mongodb-datasets" +version = "0.1.0" +description = "MongoDB dataset utilities for importing and processing datasets" +readme = "README.md" +requires-python = ">=3.11" +dependencies = [ + "datasets>=2.18.0", + "pymongo>=4.0.0", + "python-dotenv>=1.0.0", +] + +[project.scripts] +import-wikipedia = "mongodb_datasets.import_wikipedia:main" + +[build-system] +requires = ["hatchling"] +build-backend = "hatchling.build" + +[tool.uv] +dev-dependencies = [ + "pytest>=7.0.0", + "black>=22.0.0", + "ruff>=0.1.0", +] diff --git a/packages/datasets/uv.lock b/packages/datasets/uv.lock new file mode 100644 index 000000000..33ba89bb5 --- /dev/null +++ b/packages/datasets/uv.lock @@ -0,0 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-0400 Subject: [PATCH 2/5] fix --- .../atlas_search_dataset_index.jsonc | 147 ++++++++++++++++++ .../mongodb_datasets/import_wikipedia.py | 86 +++++++++- packages/datasets/pyproject.toml | 2 +- packages/datasets/uv.lock | 11 ++ 4 files changed, 238 insertions(+), 8 deletions(-) create mode 100644 packages/datasets/mongodb_datasets/atlas_search_dataset_index.jsonc diff --git a/packages/datasets/mongodb_datasets/atlas_search_dataset_index.jsonc b/packages/datasets/mongodb_datasets/atlas_search_dataset_index.jsonc new file mode 100644 index 000000000..e08746616 --- /dev/null +++ b/packages/datasets/mongodb_datasets/atlas_search_dataset_index.jsonc @@ -0,0 +1,147 @@ +/** + Atlas Search index definitions for the `articles` collection. + */ +{ + "name": "article_search", + "mappings": { + "dynamic": false, + /** + Fields to index: + - title: Full-text and autocomplete + - text: Full-text + - url: Exact and normalized + */ + "fields": { + /** + Title with both full-text and autocomplete capabilities + */ + "title": [ + { + "type": "string", + "analyzer": "lucene.standard" + }, + /** + Index optimized for autocomplete/type-ahead search. + */ + { + "type": "autocomplete", + "analyzer": "lucene.standard", + /** + Min length of n-grams indexed is 2 characters. + */ + "minGrams": 2, + /** + Max length of n-grams indexed is 15 characters. + This is a reasonable compromise between search relevance, performance, and storage cost. + */ + "maxGrams": 15, + /** + Fold diacritics to their base characters, e.g., "รก" -> "a". + */ + "foldDiacritics": true + } + ], + /** + Full-text search over the `text` field, which contains the article content. + */ + "text": { + "type": "string", + "analyzer": "text_analyzer" + }, + /** + URL for filtering and exact matching + */ + "url": [ + { + /** + For exact, case-insensitive matching on the original URL + */ + "type": "string", + "analyzer": "lucene.keyword" + }, + { + /** + For normalized, fuzzy, flexible matching + */ + "type": "string", + "analyzer": "url_normalizer_analyzer", + /** + This creates a sub-field called "url.normalized" + */ + "name": "normalized" + } + ] + } + }, + /** + Analyzers configuration for better text processing + */ + "analyzers": [ + /** + Optimized for text search over full documents in the `text` field + */ + { + "name": "text_analyzer", + "tokenizer": { + "type": "standard" + }, + "tokenFilters": [ + /** + Convert all text to lowercase + */ + { + "type": "lowercase" + }, + /** + Remove stopwords, such as "the", "and", "is", etc. + */ + { + "type": "stop", + "stopwords": "_english_" + }, + /** + Stem words to their root form, e.g., "running" -> "run" + */ + { + "type": "stemmer", + "language": "english" + } + ] + }, + { + "name": "url_normalizer_analyzer", + "tokenizer": { + "type": "keyword" + }, + "tokenFilters": [ + { + "type": "lowercase" + }, + { + /** + Remove http:// or https:// from the beginning + */ + "type": "pattern", + "pattern": "^(https|http)://", + "replacement": "" + }, + { + /** + Remove www. from the beginning + */ + "type": "pattern", + "pattern": "^www\\.", + "replacement": "" + }, + { + /** + Remove all trailing slashes + */ + "type": "pattern", + "pattern": "/+$", + "replacement": "" + } + ] + } + ] +} diff --git a/packages/datasets/mongodb_datasets/import_wikipedia.py b/packages/datasets/mongodb_datasets/import_wikipedia.py index 696b28d68..7dfac7339 100644 --- a/packages/datasets/mongodb_datasets/import_wikipedia.py +++ b/packages/datasets/mongodb_datasets/import_wikipedia.py @@ -9,12 +9,14 @@ import os import sys import logging +import argparse from typing import Dict, Any, Optional from pymongo import MongoClient from pymongo.collection import Collection from pymongo.errors import BulkWriteError from datasets import load_dataset from datasets.arrow_dataset import Dataset +from jsonc_parser import JsoncParser from .config import load_environment @@ -30,7 +32,6 @@ # Configuration BATCH_SIZE = 1000 -MAX_DOCUMENTS = None # Set to None for full dataset DATABASE_NAME = "wikipedia_dataset" COLLECTION_NAME = "articles" @@ -60,6 +61,22 @@ def setup_indexes(self) -> None: logger.info("Created unique index on 'id' field") except Exception as error: logger.warning(f"Index creation failed (may already exist): {error}") + + try: + with open("atlas_search_dataset_index.jsonc", "r") as file: + jsonc_content = file.read() + + # Parse JSONC to Python dictionary + atlas_search_dataset_index: Dict[str, Any] = JsoncParser.parse_text(jsonc_content) + + self.collection.create_search_index( + name=atlas_search_dataset_index["name"], + definition=atlas_search_dataset_index["mappings"] + ) + except Exception as error: + logger.warning(f"Search index creation failed (may already exist): {error}") + + def load_wikipedia_dataset(self) -> Dataset: """Load the Wikipedia dataset from HuggingFace.""" @@ -198,23 +215,78 @@ def close(self) -> None: logger.info("MongoDB connection closed") +def parse_args() -> argparse.Namespace: + """Parse command line arguments.""" + parser = argparse.ArgumentParser( + description="Import Wikipedia dataset from HuggingFace to MongoDB", + formatter_class=argparse.RawDescriptionHelpFormatter, + epilog=""" +Examples: + # Import full dataset (all ~240k articles) + uv run import-wikipedia + + # Import first 1000 articles for testing + uv run import-wikipedia --max-documents 1000 + + # Import 50k articles with custom connection + uv run import-wikipedia --max-documents 50000 --mongodb-connection-uri mongodb://localhost:27017 + + # Import full dataset with custom batch size + uv run import-wikipedia --batch-size 2000 + """.strip() + ) + + parser.add_argument( + "--max-documents", + type=int, + default=None, + help="Maximum number of documents to import (default: None - import all documents)" + ) + + parser.add_argument( + "--batch-size", + type=int, + default=BATCH_SIZE, + help=f"Number of documents per batch (default: {BATCH_SIZE})" + ) + + parser.add_argument( + "--mongodb-connection-uri", + type=str, + default=None, + help="MongoDB connection URI (default: uses MONGODB_ATLAS_SEARCH_CONNECTION_URI env var)" + ) + + return parser.parse_args() + + def main() -> None: """Main entry point.""" - # Get MongoDB connection string from environment - connection_uri = os.getenv("MONGODB_ATLAS_SEARCH_CONNECTION_URI") + # Parse command line arguments + args = parse_args() + + # Get MongoDB connection string - CLI arg takes precedence over env var + connection_uri = args.mongodb_connection_uri or os.getenv("MONGODB_ATLAS_SEARCH_CONNECTION_URI") if not connection_uri: - logger.error("MONGODB_ATLAS_SEARCH_CONNECTION_URI environment variable is required") - logger.error("Please set it in your .env file or export it directly") + logger.error("MongoDB connection URI is required") + logger.error("Provide via --mongodb-connection-uri or set MONGODB_ATLAS_SEARCH_CONNECTION_URI env var") sys.exit(1) + # Log configuration + if args.max_documents: + logger.info(f"Importing up to {args.max_documents:,} documents") + else: + logger.info("Importing full dataset (all documents)") + logger.info(f"Using batch size: {args.batch_size}") + importer = None try: # Initialize importer importer = WikipediaImporter(connection_uri) logger.info("Connected to MongoDB") - # Import dataset - importer.import_dataset(max_documents=MAX_DOCUMENTS) + # Import dataset with CLI arguments + importer.import_dataset(max_documents=args.max_documents) logger.info("Wikipedia dataset import completed successfully") diff --git a/packages/datasets/pyproject.toml b/packages/datasets/pyproject.toml index ff6e4f4ea..40c8bd558 100644 --- a/packages/datasets/pyproject.toml +++ b/packages/datasets/pyproject.toml @@ -2,12 +2,12 @@ name = "mongodb-datasets" version = "0.1.0" description = "MongoDB dataset utilities for importing and processing datasets" -readme = "README.md" requires-python = ">=3.11" dependencies = [ "datasets>=2.18.0", "pymongo>=4.0.0", "python-dotenv>=1.0.0", + "jsonc-parser>=1.1.5", ] [project.scripts] 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.../atlas_search_dataset_index.jsonc | 48 +++++----- .../mongodb_datasets/import_wikipedia.py | 47 +++++++--- 3 files changed, 149 insertions(+), 36 deletions(-) create mode 100644 packages/datasets/README.md diff --git a/packages/datasets/README.md b/packages/datasets/README.md new file mode 100644 index 000000000..9bae1ba50 --- /dev/null +++ b/packages/datasets/README.md @@ -0,0 +1,90 @@ +# Datasets Package + +This package provides utilities for importing, processing, and managing datasets used in the MongoDB Knowledge Service/Chatbot project. It contains both Node.js/TypeScript and Python implementations for various dataset operations. + +## Overview + +The datasets package is a hybrid TypeScript/Python package that handles: +- Dataset ingestion from various sources (HuggingFace, Atlas, etc.) +- Data processing and transformation pipelines +- MongoDB import/export operations +- Code example extraction and classification +- Natural language query generation +- Database metadata extraction + +## Structure + +### Node.js/TypeScript Components + +Located in `/src/` directory: + +- **Code Example Processing**: Extract and classify code examples from documentation +- **Page Dataset**: Load and process page-based datasets +- **Tree Generation**: Generate hierarchical data structures for NL queries +- **Database Operations**: MongoDB schema generation and database analysis +- **HuggingFace Integration**: Upload datasets to HuggingFace Hub +- **Evaluation**: Braintrust integration for dataset evaluation + +### Python/UV Components + +Located in `/mongodb_datasets/` directory: + +- **Wikipedia Import**: Import Wikipedia datasets from HuggingFace to MongoDB +- **Atlas Search**: Configure and create Atlas Search indexes +- **Configuration Management**: Environment variable and project configuration + +## Installation & Setup + +### Node.js Dependencies +```bash +npm install +npm run build +``` + +### Python Dependencies (using uv) +```bash +# Install Python dependencies +uv sync + +# Activate virtual environment +source .venv/bin/activate # or .venv\Scripts\activate on Windows +``` + +## Usage + +### Node.js Scripts + +The package provides numerous npm scripts for different dataset operations: + +```bash +# Build the project +npm run ... +``` + +### Python Scripts + +The Python components provide CLI tools for dataset import operations: + +```bash +# Import Wikipedia dataset (all articles) +uv run ... +``` + +## Configuration + +### Environment Variables + +For required environment variables, see `.env.example` in project root. +Create a `.env` file next to it with the required env vars. + +## Development + +### Testing +```bash +# Node.js tests +npm run test + +# Linting +npm run lint +npm run lint:fix +``` diff --git a/packages/datasets/mongodb_datasets/atlas_search_dataset_index.jsonc b/packages/datasets/mongodb_datasets/atlas_search_dataset_index.jsonc index e08746616..0fe044780 100644 --- a/packages/datasets/mongodb_datasets/atlas_search_dataset_index.jsonc +++ b/packages/datasets/mongodb_datasets/atlas_search_dataset_index.jsonc @@ -49,26 +49,15 @@ "analyzer": "text_analyzer" }, /** - URL for filtering and exact matching + URL for filtering */ "url": [ - { - /** - For exact, case-insensitive matching on the original URL - */ - "type": "string", - "analyzer": "lucene.keyword" - }, { /** For normalized, fuzzy, flexible matching */ "type": "string", - "analyzer": "url_normalizer_analyzer", - /** - This creates a sub-field called "url.normalized" - */ - "name": "normalized" + "analyzer": "url_normalizer_analyzer" } ] } @@ -83,28 +72,32 @@ { "name": "text_analyzer", "tokenizer": { + /** + Standard tokenizer. + From the docs: It divides text into terms based on word boundaries, + which makes it language-neutral for most use cases. + It converts all terms to lower case and removes punctuation. + */ "type": "standard" }, "tokenFilters": [ /** - Convert all text to lowercase + Remove accents */ { - "type": "lowercase" + "type": "icuFolding" }, /** - Remove stopwords, such as "the", "and", "is", etc. + Remove possessive suffixes, e.g., "John's" -> "John" */ { - "type": "stop", - "stopwords": "_english_" + "type": "englishPossessive" }, /** Stem words to their root form, e.g., "running" -> "run" */ { - "type": "stemmer", - "language": "english" + "type": "kStemming" } ] }, @@ -121,25 +114,28 @@ /** Remove http:// or https:// from the beginning */ - "type": "pattern", + "type": "regex", "pattern": "^(https|http)://", - "replacement": "" + "replacement": "", + "matches": "first" }, { /** Remove www. from the beginning */ - "type": "pattern", + "type": "regex", "pattern": "^www\\.", - "replacement": "" + "replacement": "", + "matches": "first" }, { /** Remove all trailing slashes */ - "type": "pattern", + "type": "regex", "pattern": "/+$", - "replacement": "" + "replacement": "", + "matches": "first" } ] } diff --git a/packages/datasets/mongodb_datasets/import_wikipedia.py b/packages/datasets/mongodb_datasets/import_wikipedia.py index 7dfac7339..540f8f15f 100644 --- a/packages/datasets/mongodb_datasets/import_wikipedia.py +++ b/packages/datasets/mongodb_datasets/import_wikipedia.py @@ -12,11 +12,12 @@ import argparse from typing import Dict, Any, Optional from pymongo import MongoClient +from pymongo.operations import SearchIndexModel from pymongo.collection import Collection from pymongo.errors import BulkWriteError from datasets import load_dataset from datasets.arrow_dataset import Dataset -from jsonc_parser import JsoncParser +from jsonc_parser.parser import JsoncParser from .config import load_environment @@ -63,16 +64,32 @@ def setup_indexes(self) -> None: logger.warning(f"Index creation failed (may already exist): {error}") try: - with open("atlas_search_dataset_index.jsonc", "r") as file: - jsonc_content = file.read() + # Look for the index file in the same directory as this script + import pathlib + script_dir = pathlib.Path(__file__).parent + index_file = script_dir / "atlas_search_dataset_index.jsonc" + # Parse JSONC to Python dictionary - atlas_search_dataset_index: Dict[str, Any] = JsoncParser.parse_text(jsonc_content) + parser = JsoncParser() + atlas_search_dataset_index: Dict[str, Any] = parser.parse_file(index_file) - self.collection.create_search_index( + # Create the search index definition without the name + definition = { + "mappings": atlas_search_dataset_index["mappings"], + "analyzers": atlas_search_dataset_index["analyzers"] + } + + # Create the search index + result = self.collection.create_search_index(model=SearchIndexModel( name=atlas_search_dataset_index["name"], - definition=atlas_search_dataset_index["mappings"] - ) + definition=definition, + type="search" + )) + logger.info(f"Search index creation result: {result}") + logger.info(f"Created search index {atlas_search_dataset_index['name']} for {DATABASE_NAME}.{COLLECTION_NAME}") + except FileNotFoundError: + logger.info("Atlas search index file not found, skipping search index creation") except Exception as error: logger.warning(f"Search index creation failed (may already exist): {error}") @@ -161,13 +178,17 @@ def insert_batch(self, batch: list) -> int: self.stats["errors"] += len(batch) return 0 - def import_dataset(self, max_documents: Optional[int] = None) -> None: + def import_dataset(self, max_documents: Optional[int] = None, only_create_index: bool = False) -> None: """Import the Wikipedia dataset to MongoDB.""" - logger.info(f"Starting Wikipedia dataset import to {DATABASE_NAME}.{COLLECTION_NAME}") + logger.info(f"Starting building DB indexes for {DATABASE_NAME}.{COLLECTION_NAME}") # Setup database self.setup_indexes() + if only_create_index: + logger.info(f"Only creating DB indexes for {DATABASE_NAME}.{COLLECTION_NAME}. Exiting...") + return + logger.info(f"Starting Wikipedia dataset import to {DATABASE_NAME}.{COLLECTION_NAME}") # Load dataset dataset = self.load_wikipedia_dataset() @@ -257,6 +278,12 @@ def parse_args() -> argparse.Namespace: help="MongoDB connection URI (default: uses MONGODB_ATLAS_SEARCH_CONNECTION_URI env var)" ) + parser.add_argument( + "--only-create-index", + action="store_true", + help="Only create the Atlas search index, skip importing data" + ) + return parser.parse_args() @@ -286,7 +313,7 @@ def main() -> None: logger.info("Connected to MongoDB") # Import dataset with CLI arguments - importer.import_dataset(max_documents=args.max_documents) + importer.import_dataset(max_documents=args.max_documents, only_create_index=args.only_create_index) logger.info("Wikipedia dataset import completed successfully") From 74750b565a9b5a213bef35c38dec936665daa2d9 Mon Sep 17 00:00:00 2001 From: Ben Perlmutter Date: Tue, 12 Aug 2025 12:04:01 -0400 Subject: [PATCH 4/5] new line EOFs --- packages/datasets/.env.example | 2 +- packages/datasets/.gitignore | 2 +- packages/datasets/mongodb_datasets/__init__.py | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/packages/datasets/.env.example b/packages/datasets/.env.example index 34b7ec574..9512621f4 100644 --- a/packages/datasets/.env.example +++ b/packages/datasets/.env.example @@ -10,4 +10,4 @@ HUGGINGFACE_DOCS_CODE_EXAMPLE_REPO="someuser/some-repo" MONGODB_CONNECTION_URI="..." MONGODB_DATABASE_NAME="docs-chatbot-dev" MONGODB_TEXT_TO_CODE_CONNECTION_URI="..." -MONGODB_ATLAS_SEARCH_CONNECTION_URI="..." \ No newline at end of file +MONGODB_ATLAS_SEARCH_CONNECTION_URI="..." diff --git a/packages/datasets/.gitignore b/packages/datasets/.gitignore index 1e54d6d02..4854b9da8 100644 --- a/packages/datasets/.gitignore +++ b/packages/datasets/.gitignore @@ -1,2 +1,2 @@ dataOut/ -__pycache__/ \ No newline at end of file +__pycache__/ diff --git a/packages/datasets/mongodb_datasets/__init__.py b/packages/datasets/mongodb_datasets/__init__.py index 288ab3511..728452179 100644 --- a/packages/datasets/mongodb_datasets/__init__.py +++ b/packages/datasets/mongodb_datasets/__init__.py @@ -1,3 +1,3 @@ """MongoDB Datasets - Utilities for importing datasets into MongoDB.""" -__version__ = "0.1.0" \ No newline at end of file +__version__ = "0.1.0" From 892f938992bb251e687db1029019b9f25a01f7c8 Mon Sep 17 00:00:00 2001 From: Ben Perlmutter Date: Tue, 12 Aug 2025 13:21:39 -0400 Subject: [PATCH 5/5] simpler imports --- packages/datasets/mongodb_datasets/config.py | 17 ----------------- .../mongodb_datasets/import_wikipedia.py | 5 ++--- 2 files changed, 2 insertions(+), 20 deletions(-) delete mode 100644 packages/datasets/mongodb_datasets/config.py diff --git a/packages/datasets/mongodb_datasets/config.py b/packages/datasets/mongodb_datasets/config.py deleted file mode 100644 index c77d7fd59..000000000 --- a/packages/datasets/mongodb_datasets/config.py +++ /dev/null @@ -1,17 +0,0 @@ -"""Configuration utilities for mongodb_datasets package.""" - -from pathlib import Path -from dotenv import load_dotenv - -# Find the project root .env file by traversing up from this file -# Structure: packages/datasets/mongodb_datasets/config.py -> ../../../.env -PROJECT_ROOT = Path(__file__).parent.parent.parent.parent.parent -ENV_PATH = PROJECT_ROOT / ".env" - -def load_environment() -> None: - """Load environment variables from the project .env file.""" - if ENV_PATH.exists(): - load_dotenv(ENV_PATH) - else: - # Fallback to loading from current directory - load_dotenv() \ No newline at end of file diff --git a/packages/datasets/mongodb_datasets/import_wikipedia.py b/packages/datasets/mongodb_datasets/import_wikipedia.py index 540f8f15f..f9655da47 100644 --- a/packages/datasets/mongodb_datasets/import_wikipedia.py +++ b/packages/datasets/mongodb_datasets/import_wikipedia.py @@ -18,11 +18,10 @@ from datasets import load_dataset from datasets.arrow_dataset import Dataset from jsonc_parser.parser import JsoncParser - -from .config import load_environment +from dotenv import load_dotenv # Load environment variables -load_environment() +load_dotenv() # Configure logging logging.basicConfig(