Description of the bug
Just one note, the fact that sc.read_10x_h5(input) function in scrnaseq/modules/local/templates/mtx_to_h5ad_cellranger.py is written without the gex_only=False option prevents the reading of feature types such as antibody captures or peaks.
Default option is TRUE
Command used and terminal output
sc.read_10x_h5(input, gex_only=False)
Relevant files
No response
System information
No response