Merge pull request #47 from opensrp/sync-with-upstream-0.3.0

Sync with upstream 0.3.0

Author: ndegwamartin

.github/workflows/codeql.yml

@@ -0,0 +1,77 @@
+# For most projects, this workflow file will not need changing; you simply need
+# to commit it to your repository.
+#
+# You may wish to alter this file to override the set of languages analyzed,
+# or to provide custom queries or build logic.
+#
+# ******** NOTE ********
+# We have attempted to detect the languages in your repository. Please check
+# the `language` matrix defined below to confirm you have the correct set of
+# supported CodeQL languages.
+#
+name: "CodeQL"
+
+on:
+  push:
+    branches: [ "main" ]
+  pull_request:
+    # The branches below must be a subset of the branches above
+    branches: [ "main" ]
+  schedule:
+    - cron: '25 21 * * 6'
+
+jobs:
+  analyze:
+    name: Analyze
+    runs-on: ${{ (matrix.language == 'swift' && 'macos-latest') || 'ubuntu-latest' }}
+    timeout-minutes: ${{ (matrix.language == 'swift' && 120) || 360 }}
+    permissions:
+      actions: read
+      contents: read
+      security-events: write
+
+    strategy:
+      fail-fast: false
+      matrix:
+        language: [ 'java', 'python' ]
+        # CodeQL supports [ 'cpp', 'csharp', 'go', 'java', 'javascript', 'python', 'ruby', 'swift' ]
+        # Use only 'java' to analyze code written in Java, Kotlin or both
+        # Use only 'javascript' to analyze code written in JavaScript, TypeScript or both
+        # Learn more about CodeQL language support at https://aka.ms/codeql-docs/language-support
+
+    steps:
+    - name: Checkout repository
+      uses: actions/checkout@v3
+
+    # Initializes the CodeQL tools for scanning.
+    - name: Initialize CodeQL
+      uses: github/codeql-action/init@v2
+      with:
+        languages: ${{ matrix.language }}
+        # If you wish to specify custom queries, you can do so here or in a config file.
+        # By default, queries listed here will override any specified in a config file.
+        # Prefix the list here with "+" to use these queries and those in the config file.
+
+        # For more details on CodeQL's query packs, refer to: https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
+        # queries: security-extended,security-and-quality
+
+
+    # Autobuild attempts to build any compiled languages  (C/C++, C#, Go, or Java).
+    # If this step fails, then you should remove it and run the build manually (see below)
+    - name: Autobuild
+      uses: github/codeql-action/autobuild@v2
+
+    # ℹ️ Command-line programs to run using the OS shell.
+    # 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
+
+    #   If the Autobuild fails above, remove it and uncomment the following three lines.
+    #   modify them (or add more) to build your code if your project, please refer to the EXAMPLE below for guidance.
+
+    # - run: |
+    #     echo "Run, Build Application using script"
+    #     ./location_of_script_within_repo/buildscript.sh
+
+    - name: Perform CodeQL Analysis
+      uses: github/codeql-action/analyze@v2
+      with:
+        category: "/language:${{matrix.language}}"

Dockerfile

@@ -16,7 +16,7 @@
 
 # Image for building and running tests against the source code of
 # the FHIR Gateway.
-FROM maven:3.8.5-openjdk-17-slim as build
+FROM maven:3.8.5-openjdk-11-slim as build
 
 RUN apt-get update && apt-get install -y nodejs npm
 RUN npm cache clean -f && npm install -g n && n stable

README.md

@@ -36,7 +36,7 @@ all pieces can be woven together into a single Spring Boot app. To build all
 modules, from the root run:
 
 ```shell
-mvn package
+mvn package -Dspotless.apply.skip=true
 ```
 
 The server and the plugins can be run together through this executable jar (

build.sh

@@ -1,6 +1,6 @@
 #!/bin/bash
 #
-# Copyright 2021-2022 Google LLC
+# Copyright 2021-2023 Google LLC
 #
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

charts/fhir-gateway/Chart.yaml

@@ -1,5 +1,5 @@
 #
-# Copyright 2021-2022 Google LLC
+# Copyright 2021-2023 Google LLC
 #
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

charts/fhir-gateway/templates/configmap.yaml

@@ -1,5 +1,5 @@
 #
-# Copyright 2021-2022 Google LLC
+# Copyright 2021-2023 Google LLC
 #
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

charts/fhir-gateway/templates/deployment.yaml

@@ -1,5 +1,5 @@
 #
-# Copyright 2021-2022 Google LLC
+# Copyright 2021-2023 Google LLC
 #
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

charts/fhir-gateway/templates/hpa.yaml

@@ -1,5 +1,5 @@
 #
-# Copyright 2021-2022 Google LLC
+# Copyright 2021-2023 Google LLC
 #
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

charts/fhir-gateway/templates/ingress.yaml

@@ -1,5 +1,5 @@
 #
-# Copyright 2021-2022 Google LLC
+# Copyright 2021-2023 Google LLC
 #
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

charts/fhir-gateway/templates/pdb.yaml

@@ -1,5 +1,5 @@
 #
-# Copyright 2021-2022 Google LLC
+# Copyright 2021-2023 Google LLC
 #
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.