pruning down warnings/errors in make html

[jGaboardi]

This PR gets us a good chunk of the way to clean esda docs.

• xref fix docs build directory mismatch #393

A couple outstanding items:

1. Need the 3 pngs that are missing
2. Seeing the warning below and having trouble debugging.

   •  python3.13/site-packages/nbconvert/filters/latex.py:57: RemovedInSphinx90Warning: 
         Sphinx 9 will drop support for representing paths as strings.
         Use "pathlib.Path" or "os.fspath" instead.
         text = "".join(LATEX_SUBS.get(c, c) for c in text)
     

• Did some digging and tried this solution
• But got even more mysterious:

Click to expand

Versions
========

* Platform:         darwin; (macOS-26.0.1-arm64-arm-64bit-Mach-O)
* Python version:   3.13.7 (CPython)
* Sphinx version:   8.2.3
* Docutils version: 0.21.2
* Jinja2 version:   3.1.6
* Pygments version: 2.19.2

Last Messages
=============

None.

Loaded Extensions
=================

None.

Traceback
=========

    Traceback (most recent call last):
      File "~python3.13/site-packages/sphinx/cmd/build.py", line 414, in build_main
        app = Sphinx(
            srcdir=args.sourcedir,
        ...<14 lines>...
            exception_on_warning=args.exception_on_warning,
        )
      File "~python3.13/site-packages/sphinx/application.py", line 291, in __init__
        self.setup_extension(extension)
        ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^
      File "~python3.13/site-packages/sphinx/application.py", line 489, in setup_extension
        self.registry.load_extension(self, extname)
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^
      File "~python3.13/site-packages/sphinx/registry.py", line 541, in load_extension
        mod = import_module(extname)
      File "~python3.13/importlib/__init__.py", line 88, in import_module
        return _bootstrap._gcd_import(name[level:], package, level)
               ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "<frozen importlib._bootstrap>", line 1387, in _gcd_import
      File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
      File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
      File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
      File "<frozen importlib._bootstrap_external>", line 1026, in exec_module
      File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed
      File "~python3.13/site-packages/nbsphinx/__init__.py", line 23, in <module>
        import nbconvert
      File "~python3.13/site-packages/nbconvert/__init__.py", line 6, in <module>
        from . import filters, postprocessors, preprocessors, writers
      File "~python3.13/site-packages/nbconvert/filters/__init__.py", line 8, in <module>
        from .markdown import (
        ...<6 lines>...
        )
      File "~python3.13/site-packages/nbconvert/filters/markdown.py", line 16, in <module>
        from .markdown_mistune import markdown2html_mistune
      File "~python3.13/site-packages/nbconvert/filters/markdown_mistune.py", line 21, in <module>
        from nbconvert.filters.strings import add_anchor
      File "~python3.13/site-packages/nbconvert/filters/strings.py", line 23, in <module>
        from nbconvert.preprocessors.sanitize import _get_default_css_sanitizer
      File "~python3.13/site-packages/nbconvert/preprocessors/__init__.py", line 3, in <module>
        from nbclient.exceptions import CellExecutionError
      File "~python3.13/site-packages/nbclient/__init__.py", line 2, in <module>
        from .client import NotebookClient, execute
      File "~python3.13/site-packages/nbclient/client.py", line 17, in <module>
        from jupyter_client.client import KernelClient
      File "~python3.13/site-packages/jupyter_client/__init__.py", line 3, in <module>
        from .asynchronous import AsyncKernelClient
      File "~python3.13/site-packages/jupyter_client/asynchronous/__init__.py", line 1, in <module>
        from .client import AsyncKernelClient  # noqa
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "~python3.13/site-packages/jupyter_client/asynchronous/client.py", line 12, in <module>
        from ..client import KernelClient, reqrep
      File "~python3.13/site-packages/jupyter_client/client.py", line 20, in <module>
        from .connect import ConnectionFileMixin
      File "~python3.13/site-packages/jupyter_client/connect.py", line 22, in <module>
        from jupyter_core.paths import jupyter_data_dir, jupyter_runtime_dir, secure_write
      File "~python3.13/site-packages/jupyter_core/paths.py", line 230, in <module>
        deprecation(
        ~~~~~~~~~~~^
            "Jupyter is migrating its paths to use standard platformdirs\n"
            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
        ...<3 lines>...
            "The use of platformdirs will be the default in `jupyter_core` v6"
            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
        )
        ^
      File "~python3.13/site-packages/jupyter_core/utils/__init__.py", line 91, in deprecation
        warnings.warn(message, DeprecationWarning, stacklevel=stacklevel + 1)
        ~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    DeprecationWarning: Jupyter is migrating its paths to use standard platformdirs
    given by the platformdirs library.  To remove this warning and
    see the appropriate new directories, set the environment variable
    `JUPYTER_PLATFORM_DIRS=1` and then run `jupyter --paths`.
    The use of platformdirs will be the default in `jupyter_core` v6

• tried that solution and led to nothing

[codecov]

Codecov Report

❌ Patch coverage is 75.00000% with 1 line in your changes missing coverage. Please review.
✅ Project coverage is 82.7%. Comparing base (cb1f0d7) to head (1d4727d).

Files with missing lines	Patch %	Lines
esda/moran.py	75.0%	1 Missing ⚠️

Additional details and impacted files

@@          Coverage Diff          @@
##            main    #394   +/-   ##
=====================================
  Coverage   82.7%   82.7%           
=====================================
  Files         27      27           
  Lines       3825    3825           
=====================================
  Hits        3162    3162           
  Misses       663     663           

Files with missing lines	Coverage Δ
esda/silhouettes.py	58.7% <ø> (ø)
esda/moran.py	84.9% <75.0%> (ø)

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[ljwolf]

I've sent you the missing files and some link redirections upstream, @jGaboardi, so if you merge that to your fork this will update.