Skip to content

Add support for reserializing CRAM containers #1606

@cmnbroad

Description

@cmnbroad

There are cases where we want to be able to re-serialize CRAM containers into a new stream without fully decoding and then re-encoding them (and without the need for the reference). For example, if we want to stitch together CRAM shards that were created in parallel (i.e, as Disq does), or if want to split a CRAM up into smaller CRAMs while preserving existing container boundaries. The main thing required is a means to update the stream-relative values that are in the container and slice headers, specifically the global record counter.

Metadata

Metadata

Assignees

Labels

Type

No type

Projects

No projects

Milestone

No milestone

Relationships

None yet

Development

No branches or pull requests

Issue actions