Merge branch 'main' of https://github.com/seedcase-project/template-python-package into style/format-mds

Author: lwjohnst86

.github/workflows/add-to-project.yml

@@ -26,7 +26,7 @@ jobs:
       # This is a useful security step to check for unexpected outbound calls from the runner,
       # which could indicate a compromised token or runner.
       - name: Harden the runner (Audit all outbound calls)
-        uses: step-security/harden-runner@9af89fc71515a100421586dfdb3dc9c984fbf411 # v2.19.4
+        uses: step-security/harden-runner@bf7454d06d71f1098171f2acdf0cd4708d7b5920 # v2.20.0
         with:
           egress-policy: audit
 

.github/workflows/build-website.yml

@@ -21,12 +21,12 @@ jobs:
       # This is a useful security step to check for unexpected outbound calls from the runner,
       # which could indicate a compromised token or runner.
       - name: Harden the runner (Audit all outbound calls)
-        uses: step-security/harden-runner@9af89fc71515a100421586dfdb3dc9c984fbf411 # v2.19.4
+        uses: step-security/harden-runner@bf7454d06d71f1098171f2acdf0cd4708d7b5920 # v2.20.0
         with:
           egress-policy: audit
 
       - name: Check out repository
-        uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
 
       - name: Set up Quarto
         uses: quarto-dev/quarto-actions/setup@8a96df13519ee81fd526f2dfca5962811136661b # v2.2.0

.github/workflows/checks.yml

@@ -11,15 +11,15 @@ jobs:
       # This is a useful security step to check for unexpected outbound calls from the runner,
       # which could indicate a compromised token or runner.
       - name: Harden the runner (Audit all outbound calls)
-        uses: step-security/harden-runner@9af89fc71515a100421586dfdb3dc9c984fbf411 # v2.19.4
+        uses: step-security/harden-runner@bf7454d06d71f1098171f2acdf0cd4708d7b5920 # v2.20.0
         with:
           egress-policy: audit
 
       - name: Checkout repository
-        uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
 
       - name: Set up uv
-        uses: astral-sh/setup-uv@fac544c07dec837d0ccb6301d7b5580bf5edae39 # v8.2.0
+        uses: astral-sh/setup-uv@c771a70e6277c0a99b617c7a806ffedaca235ff9 # v9.0.0
         with:
           enable-cache: true
 
@@ -41,12 +41,12 @@ jobs:
       # This is a useful security step to check for unexpected outbound calls from the runner,
       # which could indicate a compromised token or runner.
       - name: Harden the runner (Audit all outbound calls)
-        uses: step-security/harden-runner@9af89fc71515a100421586dfdb3dc9c984fbf411 # v2.19.4
+        uses: step-security/harden-runner@bf7454d06d71f1098171f2acdf0cd4708d7b5920 # v2.20.0
         with:
           egress-policy: audit
 
       - name: Checkout repository
-        uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
 
       - name: Spell check repo
         uses: crate-ci/typos@bee27e3a4fd1ea2111cf90ab89cd076c870fce14 # v1.48.0
@@ -59,12 +59,12 @@ jobs:
       # This is a useful security step to check for unexpected outbound calls from the runner,
       # which could indicate a compromised token or runner.
       - name: Harden the runner (Audit all outbound calls)
-        uses: step-security/harden-runner@9af89fc71515a100421586dfdb3dc9c984fbf411 # v2.19.4
+        uses: step-security/harden-runner@bf7454d06d71f1098171f2acdf0cd4708d7b5920 # v2.20.0
         with:
           egress-policy: audit
 
       - name: Checkout repository
-        uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
 
       - name: Set up Quarto
         uses: quarto-dev/quarto-actions/setup@8a96df13519ee81fd526f2dfca5962811136661b # v2.2.0
@@ -85,12 +85,12 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Harden the runner (Audit all outbound calls)
-        uses: step-security/harden-runner@9af89fc71515a100421586dfdb3dc9c984fbf411 # v2.19.4
+        uses: step-security/harden-runner@bf7454d06d71f1098171f2acdf0cd4708d7b5920 # v2.20.0
         with:
           egress-policy: audit
 
       - name: "Checkout Repository"
-        uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
 
       - name: "Dependency Review"
         uses: actions/dependency-review-action@a1d282b36b6f3519aa1f3fc636f609c47dddb294 # v5.0.0

.github/workflows/release.yml

@@ -24,7 +24,7 @@ jobs:
       # This is a useful security step to check for unexpected outbound calls from the runner,
       # which could indicate a compromised token or runner.
       - name: Harden the runner (Audit all outbound calls)
-        uses: step-security/harden-runner@9af89fc71515a100421586dfdb3dc9c984fbf411 # v2.19.4
+        uses: step-security/harden-runner@bf7454d06d71f1098171f2acdf0cd4708d7b5920 # v2.20.0
         with:
           egress-policy: audit
 
@@ -38,7 +38,7 @@ jobs:
           private-key: ${{ secrets.UPDATE_VERSION_TOKEN }}
 
       - name: Checkout
-        uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
         with:
           # Only need the last commit from the repo.
           fetch-depth: 0
@@ -58,7 +58,7 @@ jobs:
 
       # Install uv to use git-cliff and panache
       - name: Set up uv
-        uses: astral-sh/setup-uv@fac544c07dec837d0ccb6301d7b5580bf5edae39 # v8.2.0
+        uses: astral-sh/setup-uv@c771a70e6277c0a99b617c7a806ffedaca235ff9 # v9.0.0
         with:
           enable-cache: true
 

.pre-commit-config.yaml

@@ -11,7 +11,7 @@ repos:
       - id: gitleaks
 
   - repo: https://github.com/jolars/panache-pre-commit
-    rev: v3.0.1
+    rev: v3.0.2
     hooks:
       - id: panache-format
 

CHANGELOG.md

@@ -21,6 +21,84 @@ releases we've made so far, along with what was changed within each release.
 Commits from bots, like `dependabot` or `pre-commit-ci`, are not included in the
 changelog.
 
+## [0.27.0](https://github.com/seedcase-project/template-python-package/compare/0.26.1..0.27.0) - 2026-08-07
+
+### ✨ Features
+
+- Allow use of `Optional[]` in Ruff checks
+  [#341](https://github.com/seedcase-project/template-python-package/pull/341)
+  by [`@lwjohnst86`](https://github.com/lwjohnst86)
+  ([3b396d4](https://github.com/seedcase-project/template-python-package/commit/3b396d467f036afa8a097132b9225602c053e9f1))
+
+### 🐛 Fixes
+
+- Remove leftover workflow tags from conversion
+  [#338](https://github.com/seedcase-project/template-python-package/pull/338)
+  by [`@lwjohnst86`](https://github.com/lwjohnst86)
+  ([0fcb787](https://github.com/seedcase-project/template-python-package/commit/0fcb787915e8a9dbf0d110301e28916d9487f7a8))
+- Correct Pyrefly settings to actually run in our projects
+  [#337](https://github.com/seedcase-project/template-python-package/pull/337)
+  by [`@lwjohnst86`](https://github.com/lwjohnst86)
+  ([56a5d86](https://github.com/seedcase-project/template-python-package/commit/56a5d86c4a14cbe1798ec9aea43cd7c8b1e1c3dd))
+- Bring back Python import organising in VS Code
+  [#339](https://github.com/seedcase-project/template-python-package/pull/339)
+  by [`@lwjohnst86`](https://github.com/lwjohnst86)
+  ([25965e4](https://github.com/seedcase-project/template-python-package/commit/25965e4d38d3157224ffed45ceda5e036df9c8b9))
+- Remove Pyrefly from pre-commit, as `pre-commit.ci` fails with it
+  [#333](https://github.com/seedcase-project/template-python-package/pull/333)
+  by [`@lwjohnst86`](https://github.com/lwjohnst86)
+  ([8422401](https://github.com/seedcase-project/template-python-package/commit/84224010d8e4a7f2d3542c31be858a37983b446c))
+
+### ♻️ Refactor
+
+- Use uv not pipx in CONTRIBUTING
+  [#336](https://github.com/seedcase-project/template-python-package/pull/336)
+  by [`@lwjohnst86`](https://github.com/lwjohnst86)
+  ([bd5e601](https://github.com/seedcase-project/template-python-package/commit/bd5e6016e0e3fdad17ace49b129e2368d7544c0f))
+
+### 📝 Documentation
+
+- Rebuild README
+  [#342](https://github.com/seedcase-project/template-python-package/pull/342)
+  by [`@lwjohnst86`](https://github.com/lwjohnst86)
+  ([a5a3df2](https://github.com/seedcase-project/template-python-package/commit/a5a3df29bb8ab3f543702008919902e598314389))
+
+### 💄 Styling
+
+- Reformat some Jinja files
+  [#335](https://github.com/seedcase-project/template-python-package/pull/335)
+  by [`@lwjohnst86`](https://github.com/lwjohnst86)
+  ([7a3c538](https://github.com/seedcase-project/template-python-package/commit/7a3c5382ccce60bb5f9492828ac14cbfbbcdd8c5))
+
+### 👩‍💻 Miscellaneous
+
+- Do not run rumdl on Jinja files, it mangles them
+  [#334](https://github.com/seedcase-project/template-python-package/pull/334)
+  by [`@lwjohnst86`](https://github.com/lwjohnst86)
+  ([c1d0e30](https://github.com/seedcase-project/template-python-package/commit/c1d0e306cc24ee5f121a8d73a81359fc0cfd8751))
+- Don't copy `typos.toml` to root of template
+  [#340](https://github.com/seedcase-project/template-python-package/pull/340)
+  by [`@lwjohnst86`](https://github.com/lwjohnst86)
+  ([2215bdf](https://github.com/seedcase-project/template-python-package/commit/2215bdf1b9f8e1534f0e48396989a8622c1d90cb))
+
+## [0.26.1](https://github.com/seedcase-project/template-python-package/compare/0.26.0..0.26.1) - 2026-08-07
+
+### 🐛 Fixes
+
+- Move quartodoc renderer into root folder
+  [#332](https://github.com/seedcase-project/template-python-package/pull/332)
+  by [`@lwjohnst86`](https://github.com/lwjohnst86)
+  ([0c990c0](https://github.com/seedcase-project/template-python-package/commit/0c990c023ad7aefd06694911d39402ab8c6526cc))
+
+## [0.26.0](https://github.com/seedcase-project/template-python-package/compare/0.25.3..0.26.0) - 2026-07-31
+
+### ✨ Features
+
+- Use Seedcase badge in template Quarto config
+  [#327](https://github.com/seedcase-project/template-python-package/pull/327)
+  by [`@signekb`](https://github.com/signekb)
+  ([dc8e442](https://github.com/seedcase-project/template-python-package/commit/dc8e442951d166c353ec839b5990b1dabe4a80a4))
+
 ## [0.25.3](https://github.com/seedcase-project/template-python-package/compare/0.25.2..0.25.3) - 2026-07-29
 
 ### 🐛 Fixes

README.md

@@ -1,4 +1,5 @@
 
+
 # Template Python Package: An opinionated setup for making Python packages
 
 [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.17018496.svg)](https://doi.org/10.5281/zenodo.17018496)
@@ -7,7 +8,7 @@
 License](https://img.shields.io/github/license/seedcase-project/template-python-package.svg)](https://github.com/seedcase-project/template-python-package/blob/main/LICENSE.md)
 [![GitHub
 Release](https://img.shields.io/github/v/release/seedcase-project/template-python-package.svg)](https://github.com/seedcase-project/template-python-package/releases/latest)
-[![Test](https://github.com/seedcase-project/template-python-package/actions/workflows/test.yml/badge.svg)](https://github.com/seedcase-project/template-python-package/actions/workflows/test.yml)
+[![Checks](https://github.com/seedcase-project/template-python-package/actions/workflows/checks.yml/badge.svg)](https://github.com/seedcase-project/template-python-package/actions/workflows/checks.yml)
 [![Build
 website](https://github.com/seedcase-project/template-python-package/actions/workflows/build-website.yml/badge.svg)](https://github.com/seedcase-project/template-python-package/actions/workflows/build-website.yml)
 [![CodeQL](https://github.com/seedcase-project/template-python-package/actions/workflows/github-code-scanning/codeql/badge.svg?branch=main)](https://github.com/seedcase-project/template-python-package/actions/workflows/github-code-scanning/codeql)
@@ -69,7 +70,7 @@ If you use this project in your work, please cite it as follows:
 Johnston L.W., Brødbæk S.K., Beicher K., Vago M. (2025). Template Python
 Package: An opinionated setup for making Python packages DOI:
 10.5281/zenodo.17018496 URL:
-<https://template-python-package.seedcase-project.org>
+https://template-python-package.seedcase-project.org
 
 Or as a BibTeX entry:
 

_extensions/seedcase-project/seedcase-theme/_extension.yml

@@ -10,7 +10,7 @@ authors:
     orcid: 0000-0003-0051-3239
   - name: Kristiane Beicher
     orcid: 0000-0001-7556-9566
-version: 0.8.2
+version: 0.9.1
 quarto-required: ">=1.7.0"
 contributes:
   formats: