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regenie overview
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sgkit/stats/regenie.py

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@@ -766,7 +766,7 @@ def regenie(
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tests. These estimates are subtracted from trait values and
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sampling statistics (p-values, standard errors, etc.) are evaluated
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against the residuals. See the REGENIE preprint [1] for more details.
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For a simpler technical overview, see [2] for a detailed description
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For a technical overview, see [2, 3] for a detailed description
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of the individual stages and separate regression models involved.
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Parameters
@@ -875,6 +875,8 @@ def regenie(
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Nat Genet 53, 1097–1103 (2021). https://doi.org/10.1038/s41588-021-00870-7
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[2] - https://glow.readthedocs.io/en/latest/tertiary/whole-genome-regression.html
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[3] - https://rgcgithub.github.io/regenie/overview/
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"""
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if isinstance(covariates, Hashable):
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covariates = [covariates]

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