From 724c2c9257ddd5e6b88610da4d77f603da59227a Mon Sep 17 00:00:00 2001
From: Hadley Wickham <h.wickham@gmail.com>
Date: Fri, 27 Jun 2025 10:07:02 -0500
Subject: [PATCH 1/3] Remove functions/arguments deprecated in purrr 0.3.0

Some of these hung on because we didn't properly flag as deprecated, but I think it's time to let them go. Hopefully the revdep checks support this decision.
---
 NAMESPACE                               |  7 ---
 NEWS.md                                 |  4 ++
 R/adverb-partial.R                      | 42 ++-----------
 R/deprec-cross.R                        | 16 -----
 R/deprec-map.R                          | 11 ----
 R/deprec-utils.R                        | 19 ------
 R/detect.R                              | 19 ++----
 R/reduce.R                              | 79 -------------------------
 man/accumulate.Rd                       |  9 ---
 man/at_depth.Rd                         | 14 -----
 man/cross.Rd                            |  2 -
 man/detect.Rd                           | 13 +---
 man/get-attr.Rd                         | 22 -------
 man/in_parallel.Rd                      |  2 +-
 man/map.Rd                              |  2 +-
 man/partial.Rd                          | 19 +-----
 man/reduce_right.Rd                     | 76 ------------------------
 tests/testthat/_snaps/adverb-partial.md | 18 ------
 tests/testthat/_snaps/deprec-map.md     |  9 ---
 tests/testthat/_snaps/detect.md         | 15 -----
 tests/testthat/_snaps/reduce.md         | 21 -------
 tests/testthat/test-adverb-partial.R    | 32 ----------
 tests/testthat/test-deprec-map.R        |  3 -
 tests/testthat/test-detect.R            | 18 ------
 tests/testthat/test-reduce.R            | 51 ----------------
 25 files changed, 18 insertions(+), 505 deletions(-)
 delete mode 100644 R/deprec-map.R
 delete mode 100644 man/at_depth.Rd
 delete mode 100644 man/get-attr.Rd
 delete mode 100644 man/reduce_right.Rd
 delete mode 100644 tests/testthat/_snaps/deprec-map.md
 delete mode 100644 tests/testthat/test-deprec-map.R

diff --git a/NAMESPACE b/NAMESPACE
index fd9734cc2..12aac1a68 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -11,18 +11,15 @@ S3method(print,purrr_rate_delay)
 S3method(rate_sleep,purrr_rate_backoff)
 S3method(rate_sleep,purrr_rate_delay)
 export("%>%")
-export("%@%")
 export("%||%")
 export("pluck<-")
 export(accumulate)
 export(accumulate2)
-export(accumulate_right)
 export(array_branch)
 export(array_tree)
 export(as_mapper)
 export(as_vector)
 export(assign_in)
-export(at_depth)
 export(attr_getter)
 export(auto_browse)
 export(chuck)
@@ -31,9 +28,7 @@ export(compose)
 export(cross)
 export(cross2)
 export(cross3)
-export(cross_d)
 export(cross_df)
-export(cross_n)
 export(detect)
 export(detect_index)
 export(discard)
@@ -182,8 +177,6 @@ export(rbernoulli)
 export(rdunif)
 export(reduce)
 export(reduce2)
-export(reduce2_right)
-export(reduce_right)
 export(rep_along)
 export(rerun)
 export(safely)
diff --git a/NEWS.md b/NEWS.md
index 3c52b74ff..1576515b1 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,5 +1,9 @@
 # purrr (development version)
 
+* All functions and arguments deprecated in purrr 0.3.0 have now been removed.
+  This includes `%@%`, `accumulate_right()`, `at_depth()`, `cross_d()`,
+  `cross_n()`, `reduce2_right()`, and `reduce_right()`.
+
 * purrr gains the capacity for parallel and distributed map, powered by the
   mirai package. Newly-added `in_parallel()` wraps a function provided to
   `map()` and all its variants to enable this. See `?in_parallel` for more
diff --git a/R/adverb-partial.R b/R/adverb-partial.R
index 466e3de5b..7a50b9150 100644
--- a/R/adverb-partial.R
+++ b/R/adverb-partial.R
@@ -31,15 +31,6 @@
 #'   These dots support quasiquotation. If you unquote a value, it is
 #'   evaluated only once at function creation time.  Otherwise, it is
 #'   evaluated each time the function is called.
-#' @param .env `r lifecycle::badge("deprecated")` The environments are
-#'   now captured via quosures.
-#' @param .first `r lifecycle::badge("deprecated")` Please pass an
-#'   empty argument `... = ` to specify the position of future
-#'   arguments.
-#' @param .lazy `r lifecycle::badge("deprecated")` Please unquote the
-#'   arguments that should be evaluated once at function creation time
-#'   with `!!`.
-#'
 #' @inheritSection safely Adverbs
 #' @inherit safely return
 #' @family adverbs
@@ -88,11 +79,7 @@
 #' # `... = ` argument:
 #' my_list <- partial(list, 1, ... = , 2)
 #' my_list("foo")
-partial <- function(.f,
-                    ...,
-                    .env = deprecated(),
-                    .lazy = deprecated(),
-                    .first = deprecated()) {
+partial <- function(.f, ...) {
   args <- enquos(...)
 
   fn_expr <- enexpr(.f)
@@ -106,19 +93,6 @@ partial <- function(.f,
     )
   )
 
-  if (lifecycle::is_present(.env)) {
-    lifecycle::deprecate_warn("0.3.0", "partial(.env)", always = TRUE)
-  }
-  if (lifecycle::is_present(.lazy)) {
-    lifecycle::deprecate_warn("0.3.0", "partial(.lazy)", always = TRUE)
-    if (!.lazy) {
-      args <- map(args, ~ new_quosure(eval_tidy(.x , env = caller_env()), empty_env()))
-    }
-  }
-  if (lifecycle::is_present(.first)) {
-    lifecycle::deprecate_warn("0.3.0", "partial(.first)", always = TRUE)
-  }
-
   env <- caller_env()
   heterogeneous_envs <- !every(args, quo_is_same_env, env)
 
@@ -129,15 +103,10 @@ partial <- function(.f,
   # Reuse function symbol if possible
   fn_sym <- if (is_symbol(fn_expr)) fn_expr else quote(.fn)
 
-  if (is_false(.first)) {
-    # For compatibility
-    call <- call_modify(call2(fn_sym), ... = , !!!args)
-  } else {
-    # Pass on `...` from parent function. It should be last, this way if
-    # `args` also contain a `...` argument, the position in `args`
-    # prevails.
-    call <- call_modify(call2(fn_sym), !!!args, ... = )
-  }
+  # Pass on `...` from parent function. It should be last, this way if
+  # `args` also contain a `...` argument, the position in `args`
+  # prevails.
+  call <- call_modify(call2(fn_sym), !!!args, ... = )
 
   if (heterogeneous_envs) {
     # Forward caller environment where S3 methods might be defined.
@@ -254,4 +223,3 @@ quo_is_same_env <- function(x, env) {
   quo_env <- quo_get_env(x)
   is_reference(quo_env, env) || is_reference(quo_env, empty_env())
 }
-
diff --git a/R/deprec-cross.R b/R/deprec-cross.R
index e2c1eacb6..010e8274b 100644
--- a/R/deprec-cross.R
+++ b/R/deprec-cross.R
@@ -203,19 +203,3 @@ cross_df <- function(.l, .filter = NULL) {
     simplify_all() %>%
     tibble::as_tibble()
 }
-
-#' @export
-#' @usage NULL
-#' @rdname cross
-cross_n <- function(...) {
-  lifecycle::deprecate_stop("0.2.3", "purrr::cross_n()")
-  cross(...)
-}
-
-#' @export
-#' @usage NULL
-#' @rdname cross
-cross_d <- function(...) {
-  lifecycle::deprecate_stop("0.2.3", "purrr::cross_d()")
-  cross_df(...)
-}
diff --git a/R/deprec-map.R b/R/deprec-map.R
deleted file mode 100644
index fbf52595e..000000000
--- a/R/deprec-map.R
+++ /dev/null
@@ -1,11 +0,0 @@
-#' Map at depth
-#'
-#' This function is defunct and has been replaced by [map_depth()].
-#' See also [modify_depth()] for a version that preserves the types of
-#' the elements of the tree.
-#'
-#' @export
-#' @keywords internal
-at_depth <- function(.x, .depth, .f, ...) {
-  lifecycle::deprecate_stop("0.3.0", "at_depth()", "map_depth()")
-}
diff --git a/R/deprec-utils.R b/R/deprec-utils.R
index b09be9b19..99c5fad26 100644
--- a/R/deprec-utils.R
+++ b/R/deprec-utils.R
@@ -1,22 +1,3 @@
-#' Infix attribute accessor
-#'
-#' @description
-#' `r lifecycle::badge("deprecated")`
-#'
-#' This function was deprecated in purrr 0.3.0. Instead, lease use the `%@%`
-#' operator exported in rlang. It has an interface more consistent with `@`:
-#' uses NSE, supports S4 fields, and has an assignment variant.
-#'
-#' @param x Object
-#' @param name Attribute name
-#' @export
-#' @name get-attr
-#' @keywords internal
-`%@%` <- function(x, name) {
-  lifecycle::deprecate_warn("0.3.0", I("%@%"), I("rlang::%@%"), always = TRUE)
-  attr(x, name, exact = TRUE)
-}
-
 #' Generate random sample from a Bernoulli distribution
 #'
 #' @description
diff --git a/R/detect.R b/R/detect.R
index 6b1d87c19..672922b62 100644
--- a/R/detect.R
+++ b/R/detect.R
@@ -16,7 +16,6 @@
 #' @param .dir If `"forward"`, the default, starts at the beginning of
 #'   the vector and move towards the end; if `"backward"`, starts at
 #'   the end of the vector and moves towards the beginning.
-#' @param .right `r lifecycle::badge("deprecated")` Please use `.dir` instead.
 #' @param .default The value returned when nothing is detected.
 #' @return `detect` the value of the first item that matches the
 #'  predicate; `detect_index` the position of the matching item.
@@ -52,11 +51,11 @@
 #'
 #' # If you need to find all positions, use map_lgl():
 #' which(map_lgl(x, "foo"))
-detect <- function(.x, .f, ..., .dir = c("forward", "backward"), .right = NULL, .default = NULL) {
+detect <- function(.x, .f, ..., .dir = c("forward", "backward"), .default = NULL) {
   .f <- as_predicate(.f, ..., .mapper = TRUE)
   .dir <- arg_match0(.dir, c("forward", "backward"))
 
-  for (i in index(.x, .dir, .right, "detect")) {
+  for (i in index(.x, .dir, "detect")) {
     if (.f(.x[[i]], ...)) {
       return(.x[[i]])
     }
@@ -67,11 +66,11 @@ detect <- function(.x, .f, ..., .dir = c("forward", "backward"), .right = NULL,
 
 #' @export
 #' @rdname detect
-detect_index <- function(.x, .f, ..., .dir = c("forward", "backward"), .right = NULL) {
+detect_index <- function(.x, .f, ..., .dir = c("forward", "backward")) {
   .f <- as_predicate(.f, ..., .mapper = TRUE)
   .dir <- arg_match0(.dir, c("forward", "backward"))
 
-  for (i in index(.x, .dir, .right, "detect_index")) {
+  for (i in index(.x, .dir, "detect_index")) {
     if (.f(.x[[i]], ...)) {
       return(i)
     }
@@ -83,16 +82,6 @@ detect_index <- function(.x, .f, ..., .dir = c("forward", "backward"), .right =
 
 
 index <- function(x, dir, right = NULL, fn) {
-  if (!is_null(right)) {
-    lifecycle::deprecate_warn(
-      when = "0.3.0",
-      what = paste0(fn, "(.right)"),
-      with = paste0(fn, "(.dir)"),
-      always = TRUE
-    )
-    dir <- if (right) "backward" else "forward"
-  }
-
   idx <- seq_along(x)
   if (dir == "backward") {
     idx <- rev(idx)
diff --git a/R/reduce.R b/R/reduce.R
index 77638ca70..80d8f235c 100644
--- a/R/reduce.R
+++ b/R/reduce.R
@@ -381,13 +381,6 @@ seq_len2 <- function(start, end) {
 #'
 #' @inheritSection reduce Direction
 #'
-#' @section Life cycle:
-#'
-#' `accumulate_right()` is soft-deprecated in favour of the `.dir`
-#' argument as of rlang 0.3.0. Note that the algorithm has
-#' slightly changed: the accumulated value is passed to the right
-#' rather than the left, which is consistent with a right reduction.
-#'
 #' @seealso [reduce()] when you only need the final reduced value.
 #' @examples
 #' # With an associative operation, the final value is always the
@@ -500,75 +493,3 @@ accumulate_names <- function(nms, init, dir) {
 
   nms
 }
-
-#' Reduce from the right (retired)
-#'
-#' @description
-#' `r lifecycle::badge("deprecated")`
-#'
-#' `reduce_right()` is soft-deprecated as of purrr 0.3.0. Please use
-#' the `.dir` argument of `reduce()` instead. Note that the algorithm
-#' has changed. Whereas `reduce_right()` computed `f(f(3, 2), 1)`,
-#' `reduce(.dir = \"backward\")` computes `f(1, f(2, 3))`. This is the
-#' standard way of reducing from the right.
-#'
-#' To update your code with the same reduction as `reduce_right()`,
-#' simply reverse your vector and use a left reduction:
-#'
-#' ```R
-#' # Before:
-#' reduce_right(1:3, f)
-#'
-#' # After:
-#' reduce(rev(1:3), f)
-#' ```
-#'
-#' `reduce2_right()` is deprecated as of purrr 0.3.0 without
-#' replacement. It is not clear what algorithmic properties should a
-#' right reduction have in this case. Please reach out if you know
-#' about a use case for a right reduction with a ternary function.
-#'
-#' @inheritParams reduce
-#' @keywords internal
-#' @export
-reduce_right <- function(.x, .f, ..., .init) {
-  lifecycle::deprecate_warn(
-    when = "0.3.0",
-    what = "reduce_right()",
-    with = "reduce(.dir)",
-    always = TRUE
-  )
-
-  .x <- rev(.x) # Compatibility
-  reduce_impl(.x, .f, ..., .dir = "forward", .init = .init)
-}
-#' @rdname reduce_right
-#' @export
-reduce2_right <- function(.x, .y, .f, ..., .init) {
-  lifecycle::deprecate_warn(
-    when = "0.3.0",
-    what = "reduce2_right()",
-    with = I("reverse your vectors and use `reduce2()`"),
-    always = TRUE
-  )
-
-  reduce2_impl(.x, .y, .f, ..., .init = .init, .left = FALSE)
-}
-
-#' @rdname reduce_right
-#' @export
-accumulate_right <- function(.x, .f, ..., .init) {
-  lifecycle::deprecate_warn(
-    when = "0.3.0",
-    what = "accumulate_right()",
-    with = "accumulate(.dir)",
-    always = TRUE
-  )
-
-  # Note the order of arguments is switched
-  f <- function(y, x) {
-    .f(x, y, ...)
-  }
-
-  accumulate(.x, f, .init = .init, .dir = "backward")
-}
diff --git a/man/accumulate.Rd b/man/accumulate.Rd
index cfd8c68cd..395930e4f 100644
--- a/man/accumulate.Rd
+++ b/man/accumulate.Rd
@@ -101,15 +101,6 @@ application.
 
 \code{accumulate2()} sequentially applies a function to elements of two lists, \code{.x} and \code{.y}.
 }
-\section{Life cycle}{
-
-
-\code{accumulate_right()} is soft-deprecated in favour of the \code{.dir}
-argument as of rlang 0.3.0. Note that the algorithm has
-slightly changed: the accumulated value is passed to the right
-rather than the left, which is consistent with a right reduction.
-}
-
 \section{Direction}{
 
 
diff --git a/man/at_depth.Rd b/man/at_depth.Rd
deleted file mode 100644
index aa9a9d167..000000000
--- a/man/at_depth.Rd
+++ /dev/null
@@ -1,14 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/deprec-map.R
-\name{at_depth}
-\alias{at_depth}
-\title{Map at depth}
-\usage{
-at_depth(.x, .depth, .f, ...)
-}
-\description{
-This function is defunct and has been replaced by \code{\link[=map_depth]{map_depth()}}.
-See also \code{\link[=modify_depth]{modify_depth()}} for a version that preserves the types of
-the elements of the tree.
-}
-\keyword{internal}
diff --git a/man/cross.Rd b/man/cross.Rd
index fab082116..5ee18284b 100644
--- a/man/cross.Rd
+++ b/man/cross.Rd
@@ -5,8 +5,6 @@
 \alias{cross2}
 \alias{cross3}
 \alias{cross_df}
-\alias{cross_n}
-\alias{cross_d}
 \title{Produce all combinations of list elements}
 \usage{
 cross(.l, .filter = NULL)
diff --git a/man/detect.Rd b/man/detect.Rd
index e012db2b4..8b69eb9a8 100644
--- a/man/detect.Rd
+++ b/man/detect.Rd
@@ -5,16 +5,9 @@
 \alias{detect_index}
 \title{Find the value or position of the first match}
 \usage{
-detect(
-  .x,
-  .f,
-  ...,
-  .dir = c("forward", "backward"),
-  .right = NULL,
-  .default = NULL
-)
+detect(.x, .f, ..., .dir = c("forward", "backward"), .default = NULL)
 
-detect_index(.x, .f, ..., .dir = c("forward", "backward"), .right = NULL)
+detect_index(.x, .f, ..., .dir = c("forward", "backward"))
 }
 \arguments{
 \item{.x}{A list or vector.}
@@ -38,8 +31,6 @@ set a default value if the indexed element is \code{NULL} or does not exist.
 the vector and move towards the end; if \code{"backward"}, starts at
 the end of the vector and moves towards the beginning.}
 
-\item{.right}{\ifelse{html}{\href{https://lifecycle.r-lib.org/articles/stages.html#deprecated}{\figure{lifecycle-deprecated.svg}{options: alt='[Deprecated]'}}}{\strong{[Deprecated]}} Please use \code{.dir} instead.}
-
 \item{.default}{The value returned when nothing is detected.}
 }
 \value{
diff --git a/man/get-attr.Rd b/man/get-attr.Rd
deleted file mode 100644
index 70bcce9a5..000000000
--- a/man/get-attr.Rd
+++ /dev/null
@@ -1,22 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/deprec-utils.R
-\name{get-attr}
-\alias{get-attr}
-\alias{\%@\%}
-\title{Infix attribute accessor}
-\usage{
-x \%@\% name
-}
-\arguments{
-\item{x}{Object}
-
-\item{name}{Attribute name}
-}
-\description{
-\ifelse{html}{\href{https://lifecycle.r-lib.org/articles/stages.html#deprecated}{\figure{lifecycle-deprecated.svg}{options: alt='[Deprecated]'}}}{\strong{[Deprecated]}}
-
-This function was deprecated in purrr 0.3.0. Instead, lease use the \verb{\%@\%}
-operator exported in rlang. It has an interface more consistent with \code{@}:
-uses NSE, supports S4 fields, and has an assignment variant.
-}
-\keyword{internal}
diff --git a/man/in_parallel.Rd b/man/in_parallel.Rd
index 8ee3934c7..77e640528 100644
--- a/man/in_parallel.Rd
+++ b/man/in_parallel.Rd
@@ -142,7 +142,7 @@ recursively within each other.
 }
 
 \examples{
-\dontshow{if (interactive() && rlang::is_installed("mirai") && rlang::is_installed("carrier")) withAutoprint(\{ # examplesIf}
+\dontshow{if (interactive() && rlang::is_installed("mirai") && rlang::is_installed("carrier")) (if (getRversion() >= "3.4") withAutoprint else force)(\{ # examplesIf}
 # Run in interactive sessions only as spawns additional processes
 
 slow_lm <- function(formula, data) {
diff --git a/man/map.Rd b/man/map.Rd
index a6ce9de7e..e15c6d75e 100644
--- a/man/map.Rd
+++ b/man/map.Rd
@@ -156,7 +156,7 @@ mtcars |>
   map(summary) |>
   map_dbl("r.squared")
 
-\dontshow{if (interactive() && rlang::is_installed("mirai") && rlang::is_installed("carrier")) withAutoprint(\{ # examplesIf}
+\dontshow{if (interactive() && rlang::is_installed("mirai") && rlang::is_installed("carrier")) (if (getRversion() >= "3.4") withAutoprint else force)(\{ # examplesIf}
 # Run in interactive sessions only as spawns additional processes
 
 # To use parallelized map:
diff --git a/man/partial.Rd b/man/partial.Rd
index dcc917731..1c99493f8 100644
--- a/man/partial.Rd
+++ b/man/partial.Rd
@@ -4,13 +4,7 @@
 \alias{partial}
 \title{Partially apply a function, filling in some arguments}
 \usage{
-partial(
-  .f,
-  ...,
-  .env = deprecated(),
-  .lazy = deprecated(),
-  .first = deprecated()
-)
+partial(.f, ...)
 }
 \arguments{
 \item{.f}{a function. For the output source to read well, this should be a
@@ -25,17 +19,6 @@ arguments relative to partialised ones. See
 These dots support quasiquotation. If you unquote a value, it is
 evaluated only once at function creation time.  Otherwise, it is
 evaluated each time the function is called.}
-
-\item{.env}{\ifelse{html}{\href{https://lifecycle.r-lib.org/articles/stages.html#deprecated}{\figure{lifecycle-deprecated.svg}{options: alt='[Deprecated]'}}}{\strong{[Deprecated]}} The environments are
-now captured via quosures.}
-
-\item{.lazy}{\ifelse{html}{\href{https://lifecycle.r-lib.org/articles/stages.html#deprecated}{\figure{lifecycle-deprecated.svg}{options: alt='[Deprecated]'}}}{\strong{[Deprecated]}} Please unquote the
-arguments that should be evaluated once at function creation time
-with \verb{!!}.}
-
-\item{.first}{\ifelse{html}{\href{https://lifecycle.r-lib.org/articles/stages.html#deprecated}{\figure{lifecycle-deprecated.svg}{options: alt='[Deprecated]'}}}{\strong{[Deprecated]}} Please pass an
-empty argument \verb{... = } to specify the position of future
-arguments.}
 }
 \value{
 A function that takes the same arguments as \code{.f}, but returns
diff --git a/man/reduce_right.Rd b/man/reduce_right.Rd
deleted file mode 100644
index 830b86559..000000000
--- a/man/reduce_right.Rd
+++ /dev/null
@@ -1,76 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/reduce.R
-\name{reduce_right}
-\alias{reduce_right}
-\alias{reduce2_right}
-\alias{accumulate_right}
-\title{Reduce from the right (retired)}
-\usage{
-reduce_right(.x, .f, ..., .init)
-
-reduce2_right(.x, .y, .f, ..., .init)
-
-accumulate_right(.x, .f, ..., .init)
-}
-\arguments{
-\item{.x}{A list or atomic vector.}
-
-\item{.f}{For \code{reduce()}, a 2-argument function. The function will be passed
-the accumulated value as the first argument and the "next" value as the
-second argument.
-
-For \code{reduce2()}, a 3-argument function. The function will be passed the
-accumulated value as the first argument, the next value of \code{.x} as the
-second argument, and the next value of \code{.y} as the third argument.
-
-The reduction terminates early if \code{.f} returns a value wrapped in
-a \code{\link[=done]{done()}}.}
-
-\item{...}{Additional arguments passed on to the reduce function.
-
-We now generally recommend against using \code{...} to pass additional
-(constant) arguments to \code{.f}. Instead use a shorthand anonymous function:
-
-\if{html}{\out{<div class="sourceCode R">}}\preformatted{# Instead of
-x |> reduce(f, 1, 2, collapse = ",")
-# do:
-x |> reduce(\\(x, y) f(x, y, 1, 2, collapse = ","))
-}\if{html}{\out{</div>}}
-
-This makes it easier to understand which arguments belong to which
-function and will tend to yield better error messages.}
-
-\item{.init}{If supplied, will be used as the first value to start
-the accumulation, rather than using \code{.x[[1]]}. This is useful if
-you want to ensure that \code{reduce} returns a correct value when \code{.x}
-is empty. If missing, and \code{.x} is empty, will throw an error.}
-
-\item{.y}{For \code{reduce2()} an additional
-argument that is passed to \code{.f}. If \code{init} is not set, \code{.y}
-should be 1 element shorter than \code{.x}.}
-}
-\description{
-\ifelse{html}{\href{https://lifecycle.r-lib.org/articles/stages.html#deprecated}{\figure{lifecycle-deprecated.svg}{options: alt='[Deprecated]'}}}{\strong{[Deprecated]}}
-
-\code{reduce_right()} is soft-deprecated as of purrr 0.3.0. Please use
-the \code{.dir} argument of \code{reduce()} instead. Note that the algorithm
-has changed. Whereas \code{reduce_right()} computed \code{f(f(3, 2), 1)},
-\verb{reduce(.dir = \\"backward\\")} computes \code{f(1, f(2, 3))}. This is the
-standard way of reducing from the right.
-
-To update your code with the same reduction as \code{reduce_right()},
-simply reverse your vector and use a left reduction:
-
-\if{html}{\out{<div class="sourceCode R">}}\preformatted{# Before:
-reduce_right(1:3, f)
-
-# After:
-reduce(rev(1:3), f)
-}\if{html}{\out{</div>}}
-
-\code{reduce2_right()} is deprecated as of purrr 0.3.0 without
-replacement. It is not clear what algorithmic properties should a
-right reduction have in this case. Please reach out if you know
-about a use case for a right reduction with a ternary function.
-}
-\keyword{internal}
diff --git a/tests/testthat/_snaps/adverb-partial.md b/tests/testthat/_snaps/adverb-partial.md
index 5ab3850de..39a30d60e 100644
--- a/tests/testthat/_snaps/adverb-partial.md
+++ b/tests/testthat/_snaps/adverb-partial.md
@@ -7,24 +7,6 @@
       function (...) 
       foo(y = 3, ...)
 
-# `.lazy`, `.env`, and `.first` are soft-deprecated
-
-    Code
-      . <- partial(list, "foo", .lazy = TRUE)
-    Condition
-      Warning:
-      The `.lazy` argument of `partial()` is deprecated as of purrr 0.3.0.
-    Code
-      . <- partial(list, "foo", .env = env())
-    Condition
-      Warning:
-      The `.env` argument of `partial()` is deprecated as of purrr 0.3.0.
-    Code
-      . <- partial(list, "foo", .first = TRUE)
-    Condition
-      Warning:
-      The `.first` argument of `partial()` is deprecated as of purrr 0.3.0.
-
 # checks inputs
 
     Code
diff --git a/tests/testthat/_snaps/deprec-map.md b/tests/testthat/_snaps/deprec-map.md
deleted file mode 100644
index 84b3cfc50..000000000
--- a/tests/testthat/_snaps/deprec-map.md
+++ /dev/null
@@ -1,9 +0,0 @@
-# at_depth is defunct
-
-    Code
-      at_depth()
-    Condition
-      Error:
-      ! `at_depth()` was deprecated in purrr 0.3.0 and is now defunct.
-      i Please use `map_depth()` instead.
-
diff --git a/tests/testthat/_snaps/detect.md b/tests/testthat/_snaps/detect.md
index 92b10b13a..6003b28ed 100644
--- a/tests/testthat/_snaps/detect.md
+++ b/tests/testthat/_snaps/detect.md
@@ -14,18 +14,3 @@
       Error in `detect_index()`:
       ! `.f()` must return a single `TRUE` or `FALSE`, not a logical vector.
 
-# `.right` argument is retired
-
-    Code
-      . <- detect(1:2, ~TRUE, .right = TRUE)
-    Condition
-      Warning:
-      The `.right` argument of `detect()` is deprecated as of purrr 0.3.0.
-      i Please use the `.dir` argument instead.
-    Code
-      . <- detect_index(1:2, ~TRUE, .right = TRUE)
-    Condition
-      Warning:
-      The `.right` argument of `detect_index()` is deprecated as of purrr 0.3.0.
-      i Please use the `.dir` argument instead.
-
diff --git a/tests/testthat/_snaps/reduce.md b/tests/testthat/_snaps/reduce.md
index e1966e9ad..040c19118 100644
--- a/tests/testthat/_snaps/reduce.md
+++ b/tests/testthat/_snaps/reduce.md
@@ -30,24 +30,3 @@
       Error in `reduce2()`:
       ! Must supply `.init` when `.x` is empty.
 
-# right variants are retired
-
-    Code
-      . <- reduce_right(1:3, c)
-    Condition
-      Warning:
-      `reduce_right()` was deprecated in purrr 0.3.0.
-      i Please use the `.dir` argument of `reduce()` instead.
-    Code
-      . <- reduce2_right(1:3, 1:2, c)
-    Condition
-      Warning:
-      `reduce2_right()` was deprecated in purrr 0.3.0.
-      i Please use reverse your vectors and use `reduce2()` instead.
-    Code
-      . <- accumulate_right(1:3, c)
-    Condition
-      Warning:
-      `accumulate_right()` was deprecated in purrr 0.3.0.
-      i Please use the `.dir` argument of `accumulate()` instead.
-
diff --git a/tests/testthat/test-adverb-partial.R b/tests/testthat/test-adverb-partial.R
index 13e792618..2d143ebec 100644
--- a/tests/testthat/test-adverb-partial.R
+++ b/tests/testthat/test-adverb-partial.R
@@ -140,38 +140,6 @@ test_that("partial() preserves visibility when arguments are from the same envir
   expect_identical(withVisible(fn()), list(value = 1, visible = FALSE))
 })
 
-
-# Life cycle --------------------------------------------------------------
-
-test_that("`.lazy`, `.env`, and `.first` are soft-deprecated", {
-  expect_snapshot({
-    . <- partial(list, "foo", .lazy = TRUE)
-    . <- partial(list, "foo", .env = env())
-    . <- partial(list, "foo", .first = TRUE)
-  })
-})
-
-test_that("`.lazy` still works", {
-  local_options(lifecycle_verbosity = "quiet")
-
-  counter <- env(n = 0)
-  eager <- partial(list, n = { counter$n <- counter$n + 1; NULL }, .lazy = FALSE)
-  walk(1:10, ~eager())
-  expect_identical(counter$n, 1)
-})
-
-test_that("`.first` still works", {
-  local_options(lifecycle_verbosity = "quiet")
-
-  out <- partialised_body(partial(runif, n = rpois(1, 5), .first = FALSE))
-  exp <- expr(runif(..., n = rpois(1, 5)))
-  expect_identical(out, exp)
-
-  # partial() also works without partialised arguments
-  expect_identical(partialised_body(partial(runif, .first = TRUE)), expr(runif(...)))
-  expect_identical(partialised_body(partial(runif, .first = FALSE)), expr(runif(...)))
-})
-
 test_that("checks inputs", {
   expect_snapshot(partial(1), error = TRUE)
 })
diff --git a/tests/testthat/test-deprec-map.R b/tests/testthat/test-deprec-map.R
deleted file mode 100644
index 86dd88adb..000000000
--- a/tests/testthat/test-deprec-map.R
+++ /dev/null
@@ -1,3 +0,0 @@
-test_that("at_depth is defunct", {
-  expect_snapshot(at_depth(), error = TRUE)
-})
diff --git a/tests/testthat/test-detect.R b/tests/testthat/test-detect.R
index 192e7bd48..35b70a9e2 100644
--- a/tests/testthat/test-detect.R
+++ b/tests/testthat/test-detect.R
@@ -25,21 +25,3 @@ test_that("`detect()` requires a predicate function", {
   expect_snapshot(detect(list(1:2, 2), is.na), error = TRUE)
   expect_snapshot(detect_index(list(1:2, 2), is.na), error = TRUE)
 })
-
-
-# Lifecycle ---------------------------------------------------------------
-
-test_that("`.right` argument is retired", {
-
-  expect_snapshot({
-    . <- detect(1:2, ~ TRUE, .right = TRUE)
-    . <- detect_index(1:2, ~ TRUE, .right = TRUE)
-  })
-})
-
-test_that("`.right` argument still works", {
-  local_options(lifecycle_verbosity = "quiet")
-  is_odd <- function(x) x %% 2 == 1
-  expect_equal(detect(y, is_odd, .right = TRUE), 9)
-  expect_equal(detect_index(y, is_odd, .right = TRUE), 6)
-})
diff --git a/tests/testthat/test-reduce.R b/tests/testthat/test-reduce.R
index bd384062e..6944b2ce9 100644
--- a/tests/testthat/test-reduce.R
+++ b/tests/testthat/test-reduce.R
@@ -185,54 +185,3 @@ test_that("accumulate2() forces arguments (#643)", {
   fns <- accumulate2(list(identity, identity), "foo", compose)
   expect_true(every(fns, function(f) identical(f(1), 1)))
 })
-
-
-# Life cycle --------------------------------------------------------------
-
-test_that("right variants are retired", {
-  expect_snapshot({
-    . <- reduce_right(1:3, c)
-    . <- reduce2_right(1:3, 1:2, c)
-    . <- accumulate_right(1:3, c)
-  })
-})
-
-test_that("reduce_right still works", {
-  local_options(lifecycle_verbosity = "quiet")
-  expect_equal(reduce_right(c(1, 1), `+`), 2)
-  expect_equal(reduce_right(c(1, 1), `+`, .init = 1), 3)
-  expect_equal(reduce_right(1, `+`, .init = 1), 2)
-})
-
-test_that("reduce_right equivalent to reversing input", {
-  local_options(lifecycle_verbosity = "quiet")
-  x <- list(c(2, 1), c(4, 3), c(6, 5))
-  expect_equal(reduce_right(x, c), c(6, 5, 4, 3, 2, 1))
-  expect_equal(reduce_right(x, c, .init = 7), c(7, 6, 5, 4, 3, 2, 1))
-})
-
-test_that("reduce2_right still works", {
-  local_options(lifecycle_verbosity = "quiet")
-
-  paste2 <- function(x, y, sep) paste(x, y, sep = sep)
-  x <- c("a", "b", "c")
-  expect_equal(reduce2_right(x, c("-", "."), paste2), "c.b-a")
-  expect_equal(reduce2_right(x, c(".", "-", "."), paste2, .init = "x"), "x.c-b.a")
-
-  x <- list(c(0, 1), c(2, 3), c(4, 5))
-  y <- list(c(6, 7), c(8, 9))
-  expect_equal(reduce2_right(x, y, paste), c("4 2 8 0 6", "5 3 9 1 7"))
-})
-
-test_that("accumulate_right still works", {
-  local_options(lifecycle_verbosity = "quiet")
-
-  tt <- c("a", "b", "c")
-  expect_equal(accumulate_right(tt, paste, sep = "."), c("c.b.a", "c.b", "c"))
-
-  input <- set_names(1:26, letters)
-  expect_identical(accumulate_right(input, sum), set_names(rev(cumsum(rev(1:26))), rev(letters)))
-
-  expect_identical(accumulate_right(0:1, c, .init = 2L), list(2:0, 2:1, 2L))
-  expect_identical(accumulate_right(c(a = 0L, b = 1L), c, .init = 2L), list(b = 2:0, a = 2:1, .init = 2L))
-})

From 86616fdf750fddd963ed0d0c8d15337cff0118c7 Mon Sep 17 00:00:00 2001
From: Hadley Wickham <h.wickham@gmail.com>
Date: Fri, 27 Jun 2025 11:03:04 -0500
Subject: [PATCH 2/3] Add revdep checks

---
 revdep/README.md   |   79 +-
 revdep/cran.md     |   60 +-
 revdep/failures.md | 3296 ++++----------------------------------------
 revdep/problems.md |  350 ++++-
 4 files changed, 650 insertions(+), 3135 deletions(-)

diff --git a/revdep/README.md b/revdep/README.md
index 770d211f4..e84de10e9 100644
--- a/revdep/README.md
+++ b/revdep/README.md
@@ -1,65 +1,26 @@
 # Revdeps
 
-## Failed to check (51)
+## Failed to check (11)
 
-|package          |version |error |warning |note |
-|:----------------|:-------|:-----|:-------|:----|
-|AovBay           |0.1.0   |1     |        |     |
-|arealDB          |0.9.4   |1     |        |     |
-|autoReg          |?       |      |        |     |
-|bayesCT          |0.99.3  |1     |        |     |
-|bspcov           |1.0.1   |1     |        |     |
-|censored         |?       |      |        |     |
-|CGPfunctions     |0.6.3   |1     |        |     |
-|CSCNet           |?       |      |        |     |
-|dartR.base       |?       |      |        |     |
-|dartR.popgen     |?       |      |        |     |
-|deeptrafo        |?       |      |        |     |
-|dibble           |?       |      |        |     |
-|DR.SC            |3.4     |1     |        |     |
-|epizootic        |1.0.0   |1     |        |     |
-|GeoTox           |?       |      |        |     |
-|GseaVis          |?       |      |        |     |
-|hettx            |0.1.3   |1     |        |     |
-|immcp            |?       |      |        |     |
-|invivoPKfit      |2.0.0   |1     |        |     |
-|jsmodule         |?       |      |        |     |
-|lnmixsurv        |?       |      |        |     |
-|lsirm12pl        |1.3.3   |1     |        |     |
-|MantaID          |?       |      |        |     |
-|metajam          |0.3.1   |1     |        |     |
-|miWQS            |0.4.4   |1     |        |1    |
-|multinma         |0.7.2   |1     |        |     |
-|nesRdata         |0.3.1   |1     |        |     |
-|obliqueRSF       |?       |      |        |     |
-|ontologics       |0.7.4   |1     |        |     |
-|OVtool           |1.0.3   |1     |        |     |
-|pammtools        |?       |      |        |     |
-|pathwayTMB       |?       |      |        |     |
-|pencal           |?       |      |        |     |
-|quid             |0.0.1   |1     |        |     |
-|rdflib           |0.2.9   |1     |        |     |
-|rmlnomogram      |?       |      |        |     |
-|robber           |?       |      |        |     |
-|rplec            |?       |      |        |     |
-|RVA              |?       |      |        |     |
-|scCustomize      |3.0.1   |1     |        |1    |
-|scpi             |2.2.6   |1     |        |     |
-|SCpubr           |?       |      |        |     |
-|SEERaBomb        |2019.2  |1     |        |     |
-|SensIAT          |?       |      |        |     |
-|SimplyAgree      |0.2.0   |1     |        |     |
-|ssdGSA           |?       |      |        |     |
-|SSHAARP          |?       |      |        |     |
-|stabiliser       |1.0.6   |1     |        |     |
-|tidyseurat       |0.8.0   |1     |        |     |
-|TriDimRegression |1.0.2   |1     |        |     |
-|WRTDStidal       |1.1.4   |1     |        |     |
+|package          |version |error  |warning |note |
+|:----------------|:-------|:------|:-------|:----|
+|arealDB          |0.9.4   |1      |        |     |
+|dsTidyverse      |?       |       |        |     |
+|[kerastuneR](failures.md#kerastuner)|0.1.0.7 |__+1__ |        |     |
+|metabolic        |?       |       |        |     |
+|metajam          |0.3.1   |1      |        |     |
+|nesRdata         |0.3.1   |1      |        |     |
+|ontologics       |0.7.4   |1      |        |     |
+|rdflib           |0.2.9   |1      |        |     |
+|[stoRy](failures.md#story)|0.2.2   |__+1__ |        |     |
+|[tidyjson](failures.md#tidyjson)|0.3.2   |__+1__ |        |-1   |
+|TriDimRegression |1.0.2   |1      |        |     |
 
-## New problems (2)
+## New problems (3)
 
-|package  |version |error  |warning |note     |
-|:--------|:-------|:------|:-------|:--------|
-|[meta](problems.md#meta)|8.0-2   |       |        |1 __+1__ |
-|[waywiser](problems.md#waywiser)|0.6.0   |__+1__ |        |1        |
+|package  |version |error  |warning |note   |
+|:--------|:-------|:------|:-------|:------|
+|[CPAT](problems.md#cpat)|0.1.0   |__+1__ |        |1      |
+|[PopED](problems.md#poped)|0.7.0   |       |        |__+1__ |
+|[quincunx](problems.md#quincunx)|0.1.10  |__+2__ |        |       |
 
diff --git a/revdep/cran.md b/revdep/cran.md
index aefac2fdb..795dbd37c 100644
--- a/revdep/cran.md
+++ b/revdep/cran.md
@@ -1,65 +1,35 @@
 ## revdepcheck results
 
-We checked 1943 reverse dependencies (1937 from CRAN + 6 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
+We checked 2038 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
 
- * We saw 2 new problems
- * We failed to check 45 packages
+ * We saw 3 new problems
+ * We failed to check 11 packages
 
 Issues with CRAN packages are summarised below.
 
 ### New problems
 (This reports the first line of each new failure)
 
-* meta
+* CPAT
+  checking tests ... ERROR
+
+* PopED
   checking installed package size ... NOTE
 
-* waywiser
-  checking running R code from vignettes ... ERROR
+* quincunx
+  checking examples ... ERROR
+  checking tests ... ERROR
 
 ### Failed to check
 
-* AovBay           (NA)
 * arealDB          (NA)
-* autoReg          (NA)
-* bayesCT          (NA)
-* bspcov           (NA)
-* censored         (NA)
-* CGPfunctions     (NA)
-* CSCNet           (NA)
-* dartR.base       (NA)
-* dartR.popgen     (NA)
-* deeptrafo        (NA)
-* DR.SC            (NA)
-* epizootic        (NA)
-* GseaVis          (NA)
-* hettx            (NA)
-* immcp            (NA)
-* invivoPKfit      (NA)
-* jsmodule         (NA)
-* lnmixsurv        (NA)
-* lsirm12pl        (NA)
+* dsTidyverse      (NA)
+* kerastuneR       (NA)
+* metabolic        (NA)
 * metajam          (NA)
-* miWQS            (NA)
-* multinma         (NA)
 * nesRdata         (NA)
-* obliqueRSF       (NA)
 * ontologics       (NA)
-* OVtool           (NA)
-* pammtools        (NA)
-* pathwayTMB       (NA)
-* pencal           (NA)
-* quid             (NA)
 * rdflib           (NA)
-* robber           (NA)
-* RVA              (NA)
-* scCustomize      (NA)
-* scpi             (NA)
-* SCpubr           (NA)
-* SEERaBomb        (NA)
-* SimplyAgree      (NA)
-* ssdGSA           (NA)
-* SSHAARP          (NA)
-* stabiliser       (NA)
-* tidyseurat       (NA)
+* stoRy            (NA)
+* tidyjson         (NA)
 * TriDimRegression (NA)
-* WRTDStidal       (NA)
diff --git a/revdep/failures.md b/revdep/failures.md
index 9281836dc..29f319899 100644
--- a/revdep/failures.md
+++ b/revdep/failures.md
@@ -1,81 +1,3 @@
-# AovBay
-
-<details>
-
-* Version: 0.1.0
-* GitHub: NA
-* Source code: https://github.com/cran/AovBay
-* Date/Publication: 2021-07-22 06:30:02 UTC
-* Number of recursive dependencies: 147
-
-Run `revdepcheck::cloud_details(, "AovBay")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘AovBay’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/AovBay/new/AovBay.Rcheck/00install.out’ for details.
-    ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘AovBay’ ...
-** package ‘AovBay’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
-using C++17
-
-
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include    -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
-In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘AovBay’
-* removing ‘/tmp/workdir/AovBay/new/AovBay.Rcheck/AovBay’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘AovBay’ ...
-** package ‘AovBay’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
-using C++17
-
-
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include    -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
-In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘AovBay’
-* removing ‘/tmp/workdir/AovBay/old/AovBay.Rcheck/AovBay’
-
-
-```
 # arealDB
 
 <details>
@@ -84,7 +6,7 @@ ERROR: lazy loading failed for package ‘AovBay’
 * GitHub: https://github.com/luckinet/arealDB
 * Source code: https://github.com/cran/arealDB
 * Date/Publication: 2025-01-20 13:40:05 UTC
-* Number of recursive dependencies: 110
+* Number of recursive dependencies: 109
 
 Run `revdepcheck::cloud_details(, "arealDB")` for more info
 
@@ -142,17 +64,17 @@ ERROR: lazy loading failed for package ‘arealDB’
 
 
 ```
-# autoReg
+# dsTidyverse
 
 <details>
 
-* Version: 0.3.3
-* GitHub: https://github.com/cardiomoon/autoReg
-* Source code: https://github.com/cran/autoReg
-* Date/Publication: 2023-11-14 05:53:27 UTC
-* Number of recursive dependencies: 215
+* Version: 1.0.4
+* GitHub: NA
+* Source code: https://github.com/cran/dsTidyverse
+* Date/Publication: 2025-02-27 09:40:06 UTC
+* Number of recursive dependencies: 46
 
-Run `revdepcheck::cloud_details(, "autoReg")` for more info
+Run `revdepcheck::cloud_details(, "dsTidyverse")` for more info
 
 </details>
 
@@ -161,27 +83,27 @@ Run `revdepcheck::cloud_details(, "autoReg")` for more info
 ### Devel
 
 ```
-* using log directory ‘/tmp/workdir/autoReg/new/autoReg.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
+* using log directory ‘/tmp/workdir/dsTidyverse/new/dsTidyverse.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
 * R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
+    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.2 LTS
 * using session charset: UTF-8
 * using option ‘--no-manual’
-* checking for file ‘autoReg/DESCRIPTION’ ... OK
+* checking for file ‘dsTidyverse/DESCRIPTION’ ... OK
 ...
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... OK
-  ‘Automatic_Regression_Modeling.Rmd’ using ‘UTF-8’... OK
-  ‘Bootstrap_Prediction.Rmd’ using ‘UTF-8’... OK
-  ‘Getting_started.Rmd’ using ‘UTF-8’... OK
-  ‘Statiastical_test_in_gaze.Rmd’ using ‘UTF-8’... OK
-  ‘Survival.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
+* checking for code/documentation mismatches ... OK
+* checking Rd \usage sections ... OK
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking examples ... NONE
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+  Running ‘testthat.R’
 * DONE
-Status: OK
+Status: 1 NOTE
 
 
 
@@ -191,53 +113,53 @@ Status: OK
 ### CRAN
 
 ```
-* using log directory ‘/tmp/workdir/autoReg/old/autoReg.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
+* using log directory ‘/tmp/workdir/dsTidyverse/old/dsTidyverse.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
 * R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
+    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.2 LTS
 * using session charset: UTF-8
 * using option ‘--no-manual’
-* checking for file ‘autoReg/DESCRIPTION’ ... OK
+* checking for file ‘dsTidyverse/DESCRIPTION’ ... OK
 ...
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... OK
-  ‘Automatic_Regression_Modeling.Rmd’ using ‘UTF-8’... OK
-  ‘Bootstrap_Prediction.Rmd’ using ‘UTF-8’... OK
-  ‘Getting_started.Rmd’ using ‘UTF-8’... OK
-  ‘Statiastical_test_in_gaze.Rmd’ using ‘UTF-8’... OK
-  ‘Survival.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
+* checking for code/documentation mismatches ... OK
+* checking Rd \usage sections ... OK
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking examples ... NONE
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+  Running ‘testthat.R’
 * DONE
-Status: OK
+Status: 1 NOTE
 
 
 
 
 
 ```
-# bayesCT
+# kerastuneR
 
 <details>
 
-* Version: 0.99.3
-* GitHub: https://github.com/thevaachandereng/bayesCT
-* Source code: https://github.com/cran/bayesCT
-* Date/Publication: 2020-07-01 09:30:02 UTC
-* Number of recursive dependencies: 121
+* Version: 0.1.0.7
+* GitHub: https://github.com/EagerAI/kerastuneR
+* Source code: https://github.com/cran/kerastuneR
+* Date/Publication: 2024-04-13 13:20:02 UTC
+* Number of recursive dependencies: 109
 
-Run `revdepcheck::cloud_details(, "bayesCT")` for more info
+Run `revdepcheck::cloud_details(, "kerastuneR")` for more info
 
 </details>
 
-## In both
+## Newly broken
 
-*   checking whether package ‘bayesCT’ can be installed ... ERROR
+*   checking whether package ‘kerastuneR’ can be installed ... ERROR
     ```
     Installation failed.
-    See ‘/tmp/workdir/bayesCT/new/bayesCT.Rcheck/00install.out’ for details.
+    See ‘/tmp/workdir/kerastuneR/new/kerastuneR.Rcheck/00install.out’ for details.
     ```
 
 ## Installation
@@ -245,116 +167,50 @@ Run `revdepcheck::cloud_details(, "bayesCT")` for more info
 ### Devel
 
 ```
-* installing *source* package ‘bayesCT’ ...
-** package ‘bayesCT’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘kerastuneR’ ...
+** package ‘kerastuneR’ successfully unpacked and MD5 sums checked
 ** using staged installation
 ** R
-** data
-*** moving datasets to lazyload DB
 ** inst
 ** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
+Error: object ‘at_depth’ is not exported by 'namespace:purrr'
 Execution halted
-ERROR: lazy loading failed for package ‘bayesCT’
-* removing ‘/tmp/workdir/bayesCT/new/bayesCT.Rcheck/bayesCT’
+ERROR: lazy loading failed for package ‘kerastuneR’
+* removing ‘/tmp/workdir/kerastuneR/new/kerastuneR.Rcheck/kerastuneR’
 
 
 ```
 ### CRAN
 
 ```
-* installing *source* package ‘bayesCT’ ...
-** package ‘bayesCT’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘kerastuneR’ ...
+** package ‘kerastuneR’ successfully unpacked and MD5 sums checked
 ** using staged installation
 ** R
-** data
-*** moving datasets to lazyload DB
 ** inst
 ** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘bayesCT’
-* removing ‘/tmp/workdir/bayesCT/old/bayesCT.Rcheck/bayesCT’
-
-
-```
-# bspcov
-
-<details>
-
-* Version: 1.0.1
-* GitHub: https://github.com/statjs/bspcov
-* Source code: https://github.com/cran/bspcov
-* Date/Publication: 2024-11-13 20:10:02 UTC
-* Number of recursive dependencies: 111
-
-Run `revdepcheck::cloud_details(, "bspcov")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘bspcov’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/bspcov/new/bspcov.Rcheck/00install.out’ for details.
-    ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘bspcov’ ...
-** package ‘bspcov’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘bspcov’
-* removing ‘/tmp/workdir/bspcov/new/bspcov.Rcheck/bspcov’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘bspcov’ ...
-** package ‘bspcov’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘bspcov’
-* removing ‘/tmp/workdir/bspcov/old/bspcov.Rcheck/bspcov’
+** help
+*** installing help indices
+** building package indices
+** installing vignettes
+** testing if installed package can be loaded from temporary location
+** testing if installed package can be loaded from final location
+** testing if installed package keeps a record of temporary installation path
+* DONE (kerastuneR)
 
 
 ```
-# censored
+# metabolic
 
 <details>
 
-* Version: 0.3.2
-* GitHub: https://github.com/tidymodels/censored
-* Source code: https://github.com/cran/censored
-* Date/Publication: 2024-06-11 18:10:02 UTC
-* Number of recursive dependencies: 163
+* Version: 0.1.2
+* GitHub: https://github.com/fmmattioni/metabolic
+* Source code: https://github.com/cran/metabolic
+* Date/Publication: 2023-10-10 07:40:02 UTC
+* Number of recursive dependencies: 136
 
-Run `revdepcheck::cloud_details(, "censored")` for more info
+Run `revdepcheck::cloud_details(, "metabolic")` for more info
 
 </details>
 
@@ -363,27 +219,27 @@ Run `revdepcheck::cloud_details(, "censored")` for more info
 ### Devel
 
 ```
-* using log directory ‘/tmp/workdir/censored/new/censored.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
+* using log directory ‘/tmp/workdir/metabolic/new/metabolic.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
 * R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
+    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.2 LTS
 * using session charset: UTF-8
 * using option ‘--no-manual’
-* checking for file ‘censored/DESCRIPTION’ ... OK
+* checking for file ‘metabolic/DESCRIPTION’ ... OK
 ...
-* this is package ‘censored’ version ‘0.3.2’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required and available but unsuitable version: ‘survival’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
+* checking data for non-ASCII characters ... NOTE
+  Note: found 37 marked UTF-8 strings
+* checking LazyData ... OK
+* checking data for ASCII and uncompressed saves ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+  Running ‘spelling.R’
 * DONE
-Status: 1 ERROR
+Status: 2 NOTEs
 
 
 
@@ -393,53 +249,53 @@ Status: 1 ERROR
 ### CRAN
 
 ```
-* using log directory ‘/tmp/workdir/censored/old/censored.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
+* using log directory ‘/tmp/workdir/metabolic/old/metabolic.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
 * R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
+    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.2 LTS
 * using session charset: UTF-8
 * using option ‘--no-manual’
-* checking for file ‘censored/DESCRIPTION’ ... OK
+* checking for file ‘metabolic/DESCRIPTION’ ... OK
 ...
-* this is package ‘censored’ version ‘0.3.2’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required and available but unsuitable version: ‘survival’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
+* checking data for non-ASCII characters ... NOTE
+  Note: found 37 marked UTF-8 strings
+* checking LazyData ... OK
+* checking data for ASCII and uncompressed saves ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+  Running ‘spelling.R’
 * DONE
-Status: 1 ERROR
+Status: 2 NOTEs
 
 
 
 
 
 ```
-# CGPfunctions
+# metajam
 
 <details>
 
-* Version: 0.6.3
-* GitHub: https://github.com/ibecav/CGPfunctions
-* Source code: https://github.com/cran/CGPfunctions
-* Date/Publication: 2020-11-12 14:50:09 UTC
-* Number of recursive dependencies: 155
+* Version: 0.3.1
+* GitHub: https://github.com/NCEAS/metajam
+* Source code: https://github.com/cran/metajam
+* Date/Publication: 2024-08-16 17:50:02 UTC
+* Number of recursive dependencies: 89
 
-Run `revdepcheck::cloud_details(, "CGPfunctions")` for more info
+Run `revdepcheck::cloud_details(, "metajam")` for more info
 
 </details>
 
 ## In both
 
-*   checking whether package ‘CGPfunctions’ can be installed ... ERROR
+*   checking whether package ‘metajam’ can be installed ... ERROR
     ```
     Installation failed.
-    See ‘/tmp/workdir/CGPfunctions/new/CGPfunctions.Rcheck/00install.out’ for details.
+    See ‘/tmp/workdir/metajam/new/metajam.Rcheck/00install.out’ for details.
     ```
 
 ## Installation
@@ -447,2517 +303,189 @@ Run `revdepcheck::cloud_details(, "CGPfunctions")` for more info
 ### Devel
 
 ```
-* installing *source* package ‘CGPfunctions’ ...
-** package ‘CGPfunctions’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘metajam’ ...
+** package ‘metajam’ successfully unpacked and MD5 sums checked
 ** using staged installation
 ** R
-** data
-*** moving datasets to lazyload DB
 ** inst
 ** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
+Error in dyn.load(file, DLLpath = DLLpath, ...) : 
+  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
+  librdf.so.0: cannot open shared object file: No such file or directory
+Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
 Execution halted
-ERROR: lazy loading failed for package ‘CGPfunctions’
-* removing ‘/tmp/workdir/CGPfunctions/new/CGPfunctions.Rcheck/CGPfunctions’
+ERROR: lazy loading failed for package ‘metajam’
+* removing ‘/tmp/workdir/metajam/new/metajam.Rcheck/metajam’
 
 
 ```
 ### CRAN
 
 ```
-* installing *source* package ‘CGPfunctions’ ...
-** package ‘CGPfunctions’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘metajam’ ...
+** package ‘metajam’ successfully unpacked and MD5 sums checked
 ** using staged installation
 ** R
-** data
-*** moving datasets to lazyload DB
 ** inst
 ** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
+Error in dyn.load(file, DLLpath = DLLpath, ...) : 
+  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
+  librdf.so.0: cannot open shared object file: No such file or directory
+Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
 Execution halted
-ERROR: lazy loading failed for package ‘CGPfunctions’
-* removing ‘/tmp/workdir/CGPfunctions/old/CGPfunctions.Rcheck/CGPfunctions’
+ERROR: lazy loading failed for package ‘metajam’
+* removing ‘/tmp/workdir/metajam/old/metajam.Rcheck/metajam’
 
 
 ```
-# CSCNet
+# nesRdata
 
 <details>
 
-* Version: 0.1.2
-* GitHub: NA
-* Source code: https://github.com/cran/CSCNet
-* Date/Publication: 2022-11-08 18:50:02 UTC
-* Number of recursive dependencies: 171
+* Version: 0.3.1
+* GitHub: https://github.com/jsta/nesRdata
+* Source code: https://github.com/cran/nesRdata
+* Date/Publication: 2020-04-30 17:20:02 UTC
+* Number of recursive dependencies: 65
 
-Run `revdepcheck::cloud_details(, "CSCNet")` for more info
+Run `revdepcheck::cloud_details(, "nesRdata")` for more info
 
 </details>
 
-## Error before installation
-
-### Devel
+## In both
 
-```
-* using log directory ‘/tmp/workdir/CSCNet/new/CSCNet.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘CSCNet/DESCRIPTION’ ... OK
-...
-* this is package ‘CSCNet’ version ‘0.1.2’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘riskRegression’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
+*   checking whether package ‘nesRdata’ can be installed ... ERROR
+    ```
+    Installation failed.
+    See ‘/tmp/workdir/nesRdata/new/nesRdata.Rcheck/00install.out’ for details.
+    ```
 
+## Installation
 
+### Devel
 
+```
+* installing *source* package ‘nesRdata’ ...
+** package ‘nesRdata’ successfully unpacked and MD5 sums checked
+** using staged installation
+** R
+** data
+*** moving datasets to lazyload DB
+** inst
+** byte-compile and prepare package for lazy loading
+Error in dyn.load(file, DLLpath = DLLpath, ...) : 
+  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
+  librdf.so.0: cannot open shared object file: No such file or directory
+Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
+Execution halted
+ERROR: lazy loading failed for package ‘nesRdata’
+* removing ‘/tmp/workdir/nesRdata/new/nesRdata.Rcheck/nesRdata’
 
 
 ```
 ### CRAN
 
 ```
-* using log directory ‘/tmp/workdir/CSCNet/old/CSCNet.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘CSCNet/DESCRIPTION’ ... OK
-...
-* this is package ‘CSCNet’ version ‘0.1.2’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘riskRegression’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
+* installing *source* package ‘nesRdata’ ...
+** package ‘nesRdata’ successfully unpacked and MD5 sums checked
+** using staged installation
+** R
+** data
+*** moving datasets to lazyload DB
+** inst
+** byte-compile and prepare package for lazy loading
+Error in dyn.load(file, DLLpath = DLLpath, ...) : 
+  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
+  librdf.so.0: cannot open shared object file: No such file or directory
+Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
+Execution halted
+ERROR: lazy loading failed for package ‘nesRdata’
+* removing ‘/tmp/workdir/nesRdata/old/nesRdata.Rcheck/nesRdata’
 
 
 ```
-# dartR.base
+# ontologics
 
 <details>
 
-* Version: 0.98
-* GitHub: NA
-* Source code: https://github.com/cran/dartR.base
-* Date/Publication: 2024-09-19 13:20:02 UTC
-* Number of recursive dependencies: 288
+* Version: 0.7.4
+* GitHub: https://github.com/luckinet/ontologics
+* Source code: https://github.com/cran/ontologics
+* Date/Publication: 2025-01-17 16:50:02 UTC
+* Number of recursive dependencies: 79
 
-Run `revdepcheck::cloud_details(, "dartR.base")` for more info
+Run `revdepcheck::cloud_details(, "ontologics")` for more info
 
 </details>
 
-## Error before installation
-
-### Devel
+## In both
 
-```
-* using log directory ‘/tmp/workdir/dartR.base/new/dartR.base.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘dartR.base/DESCRIPTION’ ... OK
-...
-* this is package ‘dartR.base’ version ‘0.98’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘SNPassoc’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
+*   checking whether package ‘ontologics’ can be installed ... ERROR
+    ```
+    Installation failed.
+    See ‘/tmp/workdir/ontologics/new/ontologics.Rcheck/00install.out’ for details.
+    ```
 
+## Installation
 
+### Devel
 
+```
+* installing *source* package ‘ontologics’ ...
+** package ‘ontologics’ successfully unpacked and MD5 sums checked
+** using staged installation
+** R
+** inst
+** byte-compile and prepare package for lazy loading
+Error in dyn.load(file, DLLpath = DLLpath, ...) : 
+  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
+  librdf.so.0: cannot open shared object file: No such file or directory
+Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
+Execution halted
+ERROR: lazy loading failed for package ‘ontologics’
+* removing ‘/tmp/workdir/ontologics/new/ontologics.Rcheck/ontologics’
 
 
 ```
 ### CRAN
 
 ```
-* using log directory ‘/tmp/workdir/dartR.base/old/dartR.base.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘dartR.base/DESCRIPTION’ ... OK
-...
-* this is package ‘dartR.base’ version ‘0.98’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘SNPassoc’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# dartR.popgen
-
-<details>
-
-* Version: 1.0.0
-* GitHub: NA
-* Source code: https://github.com/cran/dartR.popgen
-* Date/Publication: 2024-06-27 23:20:04 UTC
-* Number of recursive dependencies: 175
-
-Run `revdepcheck::cloud_details(, "dartR.popgen")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/dartR.popgen/new/dartR.popgen.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘dartR.popgen/DESCRIPTION’ ... OK
-...
-* this is package ‘dartR.popgen’ version ‘1.0.0’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘dartR.base’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/dartR.popgen/old/dartR.popgen.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘dartR.popgen/DESCRIPTION’ ... OK
-...
-* this is package ‘dartR.popgen’ version ‘1.0.0’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘dartR.base’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# deeptrafo
-
-<details>
-
-* Version: 1.0-0
-* GitHub: https://github.com/neural-structured-additive-learning/deeptrafo
-* Source code: https://github.com/cran/deeptrafo
-* Date/Publication: 2024-12-03 18:40:02 UTC
-* Number of recursive dependencies: 109
-
-Run `revdepcheck::cloud_details(, "deeptrafo")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/deeptrafo/new/deeptrafo.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘deeptrafo/DESCRIPTION’ ... OK
-...
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘mlt’
-
-Packages suggested but not available for checking: 'tram', 'cotram'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/deeptrafo/old/deeptrafo.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘deeptrafo/DESCRIPTION’ ... OK
-...
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘mlt’
-
-Packages suggested but not available for checking: 'tram', 'cotram'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# dibble
-
-<details>
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/dibble
-* Number of recursive dependencies: 51
-
-Run `revdepcheck::cloud_details(, "dibble")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# DR.SC
-
-<details>
-
-* Version: 3.4
-* GitHub: https://github.com/feiyoung/DR.SC
-* Source code: https://github.com/cran/DR.SC
-* Date/Publication: 2024-03-19 08:40:02 UTC
-* Number of recursive dependencies: 151
-
-Run `revdepcheck::cloud_details(, "DR.SC")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘DR.SC’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/DR.SC/new/DR.SC.Rcheck/00install.out’ for details.
-    ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘DR.SC’ ...
-** package ‘DR.SC’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
-using C++17
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -DARMA_64BIT_WORD -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -DARMA_64BIT_WORD -fpic  -g -O2  -c getNB_fast.cpp -o getNB_fast.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -DARMA_64BIT_WORD -fpic  -g -O2  -c mt_paral_job.cpp -o mt_paral_job.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -DARMA_64BIT_WORD -fpic  -g -O2  -c mt_paral_job2.cpp -o mt_paral_job2.o
-...
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘DR.SC’
-* removing ‘/tmp/workdir/DR.SC/new/DR.SC.Rcheck/DR.SC’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘DR.SC’ ...
-** package ‘DR.SC’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
-using C++17
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -DARMA_64BIT_WORD -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -DARMA_64BIT_WORD -fpic  -g -O2  -c getNB_fast.cpp -o getNB_fast.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -DARMA_64BIT_WORD -fpic  -g -O2  -c mt_paral_job.cpp -o mt_paral_job.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -DARMA_64BIT_WORD -fpic  -g -O2  -c mt_paral_job2.cpp -o mt_paral_job2.o
-...
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘DR.SC’
-* removing ‘/tmp/workdir/DR.SC/old/DR.SC.Rcheck/DR.SC’
-
-
-```
-# epizootic
-
-<details>
-
-* Version: 1.0.0
-* GitHub: https://github.com/viralemergence/epizootic
-* Source code: https://github.com/cran/epizootic
-* Date/Publication: 2024-10-02 13:10:05 UTC
-* Number of recursive dependencies: 93
-
-Run `revdepcheck::cloud_details(, "epizootic")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘epizootic’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/epizootic/new/epizootic.Rcheck/00install.out’ for details.
-    ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘epizootic’ ...
-** package ‘epizootic’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -c aspatial_siri.cpp -o aspatial_siri.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o epizootic.so RcppExports.o aspatial_siri.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR
-installing to /tmp/workdir/epizootic/new/epizootic.Rcheck/00LOCK-epizootic/00new/epizootic/libs
-** R
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘epizootic’
-* removing ‘/tmp/workdir/epizootic/new/epizootic.Rcheck/epizootic’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘epizootic’ ...
-** package ‘epizootic’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -c aspatial_siri.cpp -o aspatial_siri.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o epizootic.so RcppExports.o aspatial_siri.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR
-installing to /tmp/workdir/epizootic/old/epizootic.Rcheck/00LOCK-epizootic/00new/epizootic/libs
-** R
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘epizootic’
-* removing ‘/tmp/workdir/epizootic/old/epizootic.Rcheck/epizootic’
-
-
-```
-# GeoTox
-
-<details>
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/GeoTox
-* Number of recursive dependencies: 143
-
-Run `revdepcheck::cloud_details(, "GeoTox")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# GseaVis
-
-<details>
-
-* Version: 0.0.5
-* GitHub: https://github.com/junjunlab/GseaVis
-* Source code: https://github.com/cran/GseaVis
-* Date/Publication: 2022-12-20 19:40:07 UTC
-* Number of recursive dependencies: 104
-
-Run `revdepcheck::cloud_details(, "GseaVis")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/GseaVis/new/GseaVis.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘GseaVis/DESCRIPTION’ ... OK
-...
-* this is package ‘GseaVis’ version ‘0.0.5’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘DOSE’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/GseaVis/old/GseaVis.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘GseaVis/DESCRIPTION’ ... OK
-...
-* this is package ‘GseaVis’ version ‘0.0.5’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘DOSE’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# hettx
-
-<details>
-
-* Version: 0.1.3
-* GitHub: https://github.com/bfifield/hettx
-* Source code: https://github.com/cran/hettx
-* Date/Publication: 2023-08-19 22:22:34 UTC
-* Number of recursive dependencies: 84
-
-Run `revdepcheck::cloud_details(, "hettx")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘hettx’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/hettx/new/hettx.Rcheck/00install.out’ for details.
-    ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘hettx’ ...
-** package ‘hettx’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘hettx’
-* removing ‘/tmp/workdir/hettx/new/hettx.Rcheck/hettx’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘hettx’ ...
-** package ‘hettx’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘hettx’
-* removing ‘/tmp/workdir/hettx/old/hettx.Rcheck/hettx’
-
-
-```
-# immcp
-
-<details>
-
-* Version: 1.0.3
-* GitHub: https://github.com/YuanlongHu/immcp
-* Source code: https://github.com/cran/immcp
-* Date/Publication: 2022-05-12 05:50:02 UTC
-* Number of recursive dependencies: 187
-
-Run `revdepcheck::cloud_details(, "immcp")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/immcp/new/immcp.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘immcp/DESCRIPTION’ ... OK
-...
-* this is package ‘immcp’ version ‘1.0.3’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'clusterProfiler', 'DOSE'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/immcp/old/immcp.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘immcp/DESCRIPTION’ ... OK
-...
-* this is package ‘immcp’ version ‘1.0.3’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'clusterProfiler', 'DOSE'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# invivoPKfit
-
-<details>
-
-* Version: 2.0.0
-* GitHub: NA
-* Source code: https://github.com/cran/invivoPKfit
-* Date/Publication: 2025-01-09 14:30:02 UTC
-* Number of recursive dependencies: 172
-
-Run `revdepcheck::cloud_details(, "invivoPKfit")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘invivoPKfit’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/invivoPKfit/new/invivoPKfit.Rcheck/00install.out’ for details.
-    ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘invivoPKfit’ ...
-** package ‘invivoPKfit’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error: object ‘expand1’ is not exported by 'namespace:Matrix'
-Execution halted
-ERROR: lazy loading failed for package ‘invivoPKfit’
-* removing ‘/tmp/workdir/invivoPKfit/new/invivoPKfit.Rcheck/invivoPKfit’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘invivoPKfit’ ...
-** package ‘invivoPKfit’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error: object ‘expand1’ is not exported by 'namespace:Matrix'
-Execution halted
-ERROR: lazy loading failed for package ‘invivoPKfit’
-* removing ‘/tmp/workdir/invivoPKfit/old/invivoPKfit.Rcheck/invivoPKfit’
-
-
-```
-# jsmodule
-
-<details>
-
-* Version: 1.6.1
-* GitHub: https://github.com/jinseob2kim/jsmodule
-* Source code: https://github.com/cran/jsmodule
-* Date/Publication: 2025-01-08 13:10:02 UTC
-* Number of recursive dependencies: 241
-
-Run `revdepcheck::cloud_details(, "jsmodule")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/jsmodule/new/jsmodule.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘jsmodule/DESCRIPTION’ ... OK
-...
-* checking tests ... OK
-  Running ‘testthat.R’
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... OK
-  ‘jsmodule.Rmd’ using ‘UTF-8’... OK
-  ‘jsmodule_subgroup_cmprsk.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: OK
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/jsmodule/old/jsmodule.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘jsmodule/DESCRIPTION’ ... OK
-...
-* checking tests ... OK
-  Running ‘testthat.R’
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... OK
-  ‘jsmodule.Rmd’ using ‘UTF-8’... OK
-  ‘jsmodule_subgroup_cmprsk.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: OK
-
-
-
-
-
-```
-# lnmixsurv
-
-<details>
-
-* Version: 3.1.6
-* GitHub: NA
-* Source code: https://github.com/cran/lnmixsurv
-* Date/Publication: 2024-09-03 15:20:08 UTC
-* Number of recursive dependencies: 195
-
-Run `revdepcheck::cloud_details(, "lnmixsurv")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/lnmixsurv/new/lnmixsurv.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘lnmixsurv/DESCRIPTION’ ... OK
-...
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... OK
-  ‘compare.Rmd’ using ‘UTF-8’... OK
-  ‘expectation_maximization.Rmd’ using ‘UTF-8’... OK
-  ‘intercept_only.Rmd’ using ‘UTF-8’... OK
-  ‘lnmixsurv.Rmd’ using ‘UTF-8’... OK
-  ‘parallel_computation.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 4 NOTEs
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/lnmixsurv/old/lnmixsurv.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘lnmixsurv/DESCRIPTION’ ... OK
-...
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... OK
-  ‘compare.Rmd’ using ‘UTF-8’... OK
-  ‘expectation_maximization.Rmd’ using ‘UTF-8’... OK
-  ‘intercept_only.Rmd’ using ‘UTF-8’... OK
-  ‘lnmixsurv.Rmd’ using ‘UTF-8’... OK
-  ‘parallel_computation.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 4 NOTEs
-
-
-
-
-
-```
-# lsirm12pl
-
-<details>
-
-* Version: 1.3.3
-* GitHub: NA
-* Source code: https://github.com/cran/lsirm12pl
-* Date/Publication: 2024-08-28 23:00:02 UTC
-* Number of recursive dependencies: 123
-
-Run `revdepcheck::cloud_details(, "lsirm12pl")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘lsirm12pl’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/lsirm12pl/new/lsirm12pl.Rcheck/00install.out’ for details.
-    ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘lsirm12pl’ ...
-** package ‘lsirm12pl’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -c lsirm1pl.cpp -o lsirm1pl.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -c lsirm2pl.cpp -o lsirm2pl.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -c lsm.cpp -o lsm.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -c utility_cpp.cpp -o utility_cpp.o
-...
-** R
-** data
-*** moving datasets to lazyload DB
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘lsirm12pl’
-* removing ‘/tmp/workdir/lsirm12pl/new/lsirm12pl.Rcheck/lsirm12pl’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘lsirm12pl’ ...
-** package ‘lsirm12pl’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -c lsirm1pl.cpp -o lsirm1pl.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -c lsirm2pl.cpp -o lsirm2pl.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -c lsm.cpp -o lsm.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -c utility_cpp.cpp -o utility_cpp.o
-...
-** R
-** data
-*** moving datasets to lazyload DB
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘lsirm12pl’
-* removing ‘/tmp/workdir/lsirm12pl/old/lsirm12pl.Rcheck/lsirm12pl’
-
-
-```
-# MantaID
-
-<details>
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/MantaID
-* Number of recursive dependencies: 157
-
-Run `revdepcheck::cloud_details(, "MantaID")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# metajam
-
-<details>
-
-* Version: 0.3.1
-* GitHub: https://github.com/NCEAS/metajam
-* Source code: https://github.com/cran/metajam
-* Date/Publication: 2024-08-16 17:50:02 UTC
-* Number of recursive dependencies: 90
-
-Run `revdepcheck::cloud_details(, "metajam")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘metajam’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/metajam/new/metajam.Rcheck/00install.out’ for details.
-    ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘metajam’ ...
-** package ‘metajam’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) : 
-  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
-  librdf.so.0: cannot open shared object file: No such file or directory
-Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘metajam’
-* removing ‘/tmp/workdir/metajam/new/metajam.Rcheck/metajam’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘metajam’ ...
-** package ‘metajam’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) : 
-  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
-  librdf.so.0: cannot open shared object file: No such file or directory
-Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘metajam’
-* removing ‘/tmp/workdir/metajam/old/metajam.Rcheck/metajam’
-
-
-```
-# miWQS
-
-<details>
-
-* Version: 0.4.4
-* GitHub: https://github.com/phargarten2/miWQS
-* Source code: https://github.com/cran/miWQS
-* Date/Publication: 2021-04-02 21:50:02 UTC
-* Number of recursive dependencies: 151
-
-Run `revdepcheck::cloud_details(, "miWQS")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘miWQS’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/miWQS/new/miWQS.Rcheck/00install.out’ for details.
-    ```
-
-*   checking package dependencies ... NOTE
-    ```
-    Package suggested but not available for checking: ‘wqs’
-    ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘miWQS’ ...
-** package ‘miWQS’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘miWQS’
-* removing ‘/tmp/workdir/miWQS/new/miWQS.Rcheck/miWQS’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘miWQS’ ...
-** package ‘miWQS’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘miWQS’
-* removing ‘/tmp/workdir/miWQS/old/miWQS.Rcheck/miWQS’
-
-
-```
-# multinma
-
-<details>
-
-* Version: 0.7.2
-* GitHub: https://github.com/dmphillippo/multinma
-* Source code: https://github.com/cran/multinma
-* Date/Publication: 2024-09-16 12:20:02 UTC
-* Number of recursive dependencies: 151
-
-Run `revdepcheck::cloud_details(, "multinma")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘multinma’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/multinma/new/multinma.Rcheck/00install.out’ for details.
-    ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘multinma’ ...
-** package ‘multinma’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
-using C++17
-
-
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include    -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
-In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
-...
-/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0:   required from ‘double stan::mcmc::dense_e_metric<Model, BaseRNG>::T(stan::mcmc::dense_e_point&) [with Model = model_survival_param_namespace::model_survival_param; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
-/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0:   required from here
-/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
-  654 |   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
-      |                                                                          ^~~~~~~~~
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_survival_param.o] Error 1
-ERROR: compilation failed for package ‘multinma’
-* removing ‘/tmp/workdir/multinma/new/multinma.Rcheck/multinma’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘multinma’ ...
-** package ‘multinma’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
-using C++17
-
-
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include    -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
-In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
-...
-/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0:   required from ‘double stan::mcmc::dense_e_metric<Model, BaseRNG>::T(stan::mcmc::dense_e_point&) [with Model = model_survival_param_namespace::model_survival_param; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]’
-/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0:   required from here
-/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
-  654 |   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
-      |                                                                          ^~~~~~~~~
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_survival_param.o] Error 1
-ERROR: compilation failed for package ‘multinma’
-* removing ‘/tmp/workdir/multinma/old/multinma.Rcheck/multinma’
-
-
-```
-# nesRdata
-
-<details>
-
-* Version: 0.3.1
-* GitHub: https://github.com/jsta/nesRdata
-* Source code: https://github.com/cran/nesRdata
-* Date/Publication: 2020-04-30 17:20:02 UTC
-* Number of recursive dependencies: 66
-
-Run `revdepcheck::cloud_details(, "nesRdata")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘nesRdata’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/nesRdata/new/nesRdata.Rcheck/00install.out’ for details.
-    ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘nesRdata’ ...
-** package ‘nesRdata’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) : 
-  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
-  librdf.so.0: cannot open shared object file: No such file or directory
-Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘nesRdata’
-* removing ‘/tmp/workdir/nesRdata/new/nesRdata.Rcheck/nesRdata’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘nesRdata’ ...
-** package ‘nesRdata’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) : 
-  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
-  librdf.so.0: cannot open shared object file: No such file or directory
-Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘nesRdata’
-* removing ‘/tmp/workdir/nesRdata/old/nesRdata.Rcheck/nesRdata’
-
-
-```
-# obliqueRSF
-
-<details>
-
-* Version: 0.1.2
-* GitHub: NA
-* Source code: https://github.com/cran/obliqueRSF
-* Date/Publication: 2022-08-28 20:50:02 UTC
-* Number of recursive dependencies: 117
-
-Run `revdepcheck::cloud_details(, "obliqueRSF")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/obliqueRSF/new/obliqueRSF.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘obliqueRSF/DESCRIPTION’ ... OK
-...
-* checking for missing documentation entries ... OK
-* checking for code/documentation mismatches ... OK
-* checking Rd \usage sections ... OK
-* checking Rd contents ... OK
-* checking for unstated dependencies in examples ... OK
-* checking line endings in C/C++/Fortran sources/headers ... OK
-* checking compiled code ... OK
-* checking examples ... OK
-* DONE
-Status: OK
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/obliqueRSF/old/obliqueRSF.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘obliqueRSF/DESCRIPTION’ ... OK
-...
-* checking for missing documentation entries ... OK
-* checking for code/documentation mismatches ... OK
-* checking Rd \usage sections ... OK
-* checking Rd contents ... OK
-* checking for unstated dependencies in examples ... OK
-* checking line endings in C/C++/Fortran sources/headers ... OK
-* checking compiled code ... OK
-* checking examples ... OK
-* DONE
-Status: OK
-
-
-
-
-
-```
-# ontologics
-
-<details>
-
-* Version: 0.7.4
-* GitHub: https://github.com/luckinet/ontologics
-* Source code: https://github.com/cran/ontologics
-* Date/Publication: 2025-01-17 16:50:02 UTC
-* Number of recursive dependencies: 80
-
-Run `revdepcheck::cloud_details(, "ontologics")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘ontologics’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/ontologics/new/ontologics.Rcheck/00install.out’ for details.
-    ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘ontologics’ ...
-** package ‘ontologics’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) : 
-  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
-  librdf.so.0: cannot open shared object file: No such file or directory
-Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘ontologics’
-* removing ‘/tmp/workdir/ontologics/new/ontologics.Rcheck/ontologics’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘ontologics’ ...
-** package ‘ontologics’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) : 
-  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
-  librdf.so.0: cannot open shared object file: No such file or directory
-Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘ontologics’
-* removing ‘/tmp/workdir/ontologics/old/ontologics.Rcheck/ontologics’
-
-
-```
-# OVtool
-
-<details>
-
-* Version: 1.0.3
-* GitHub: NA
-* Source code: https://github.com/cran/OVtool
-* Date/Publication: 2021-11-02 08:10:07 UTC
-* Number of recursive dependencies: 156
-
-Run `revdepcheck::cloud_details(, "OVtool")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘OVtool’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/OVtool/new/OVtool.Rcheck/00install.out’ for details.
-    ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘OVtool’ ...
-** package ‘OVtool’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘twang’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Execution halted
-ERROR: lazy loading failed for package ‘OVtool’
-* removing ‘/tmp/workdir/OVtool/new/OVtool.Rcheck/OVtool’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘OVtool’ ...
-** package ‘OVtool’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘twang’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Execution halted
-ERROR: lazy loading failed for package ‘OVtool’
-* removing ‘/tmp/workdir/OVtool/old/OVtool.Rcheck/OVtool’
-
-
-```
-# pammtools
-
-<details>
-
-* Version: 0.5.93
-* GitHub: https://github.com/adibender/pammtools
-* Source code: https://github.com/cran/pammtools
-* Date/Publication: 2024-02-25 10:10:02 UTC
-* Number of recursive dependencies: 124
-
-Run `revdepcheck::cloud_details(, "pammtools")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/pammtools/new/pammtools.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘pammtools/DESCRIPTION’ ... OK
-...
-* checking data for non-ASCII characters ... OK
-* checking LazyData ... OK
-* checking data for ASCII and uncompressed saves ... OK
-* checking R/sysdata.rda ... OK
-* checking examples ... OK
-* checking for unstated dependencies in ‘tests’ ... OK
-* checking tests ... OK
-  Running ‘testthat.R’
-* DONE
-Status: OK
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/pammtools/old/pammtools.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘pammtools/DESCRIPTION’ ... OK
-...
-* checking data for non-ASCII characters ... OK
-* checking LazyData ... OK
-* checking data for ASCII and uncompressed saves ... OK
-* checking R/sysdata.rda ... OK
-* checking examples ... OK
-* checking for unstated dependencies in ‘tests’ ... OK
-* checking tests ... OK
-  Running ‘testthat.R’
-* DONE
-Status: OK
-
-
-
-
-
-```
-# pathwayTMB
-
-<details>
-
-* Version: 0.1.3
-* GitHub: NA
-* Source code: https://github.com/cran/pathwayTMB
-* Date/Publication: 2022-08-09 13:50:02 UTC
-* Number of recursive dependencies: 226
-
-Run `revdepcheck::cloud_details(, "pathwayTMB")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/pathwayTMB/new/pathwayTMB.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘pathwayTMB/DESCRIPTION’ ... OK
-...
-* this is package ‘pathwayTMB’ version ‘0.1.3’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘clusterProfiler’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/pathwayTMB/old/pathwayTMB.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘pathwayTMB/DESCRIPTION’ ... OK
-...
-* this is package ‘pathwayTMB’ version ‘0.1.3’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘clusterProfiler’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# pencal
-
-<details>
-
-* Version: 2.2.2
-* GitHub: NA
-* Source code: https://github.com/cran/pencal
-* Date/Publication: 2024-06-12 11:10:02 UTC
-* Number of recursive dependencies: 174
-
-Run `revdepcheck::cloud_details(, "pencal")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/pencal/new/pencal.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘pencal/DESCRIPTION’ ... OK
-...
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘riskRegression’
-
-Package suggested but not available for checking: ‘ptmixed’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/pencal/old/pencal.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘pencal/DESCRIPTION’ ... OK
-...
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘riskRegression’
-
-Package suggested but not available for checking: ‘ptmixed’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# quid
-
-<details>
-
-* Version: 0.0.1
-* GitHub: NA
-* Source code: https://github.com/cran/quid
-* Date/Publication: 2021-12-09 09:00:02 UTC
-* Number of recursive dependencies: 94
-
-Run `revdepcheck::cloud_details(, "quid")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘quid’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/quid/new/quid.Rcheck/00install.out’ for details.
-    ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘quid’ ...
-** package ‘quid’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘quid’
-* removing ‘/tmp/workdir/quid/new/quid.Rcheck/quid’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘quid’ ...
-** package ‘quid’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘quid’
-* removing ‘/tmp/workdir/quid/old/quid.Rcheck/quid’
-
-
-```
-# rdflib
-
-<details>
-
-* Version: 0.2.9
-* GitHub: https://github.com/ropensci/rdflib
-* Source code: https://github.com/cran/rdflib
-* Date/Publication: 2024-08-17 06:00:05 UTC
-* Number of recursive dependencies: 93
-
-Run `revdepcheck::cloud_details(, "rdflib")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘rdflib’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/rdflib/new/rdflib.Rcheck/00install.out’ for details.
-    ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘rdflib’ ...
-** package ‘rdflib’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) : 
-  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
-  librdf.so.0: cannot open shared object file: No such file or directory
-Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘rdflib’
-* removing ‘/tmp/workdir/rdflib/new/rdflib.Rcheck/rdflib’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘rdflib’ ...
-** package ‘rdflib’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) : 
-  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
-  librdf.so.0: cannot open shared object file: No such file or directory
-Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘rdflib’
-* removing ‘/tmp/workdir/rdflib/old/rdflib.Rcheck/rdflib’
-
-
-```
-# rmlnomogram
-
-<details>
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/rmlnomogram
-* Number of recursive dependencies: 181
-
-Run `revdepcheck::cloud_details(, "rmlnomogram")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# robber
-
-<details>
-
-* Version: 0.2.4
-* GitHub: https://github.com/Chabert-Liddell/robber
-* Source code: https://github.com/cran/robber
-* Date/Publication: 2024-02-07 13:50:02 UTC
-* Number of recursive dependencies: 143
-
-Run `revdepcheck::cloud_details(, "robber")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/robber/new/robber.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘robber/DESCRIPTION’ ... OK
-...
-* checking tests ... OK
-  Running ‘spelling.R’
-  Running ‘testthat.R’
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... OK
-  ‘topological-analysis.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: OK
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/robber/old/robber.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘robber/DESCRIPTION’ ... OK
-...
-* checking tests ... OK
-  Running ‘spelling.R’
-  Running ‘testthat.R’
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... OK
-  ‘topological-analysis.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: OK
-
-
-
-
-
-```
-# rplec
-
-<details>
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/rplec
-* Number of recursive dependencies: 122
-
-Run `revdepcheck::cloud_details(, "rplec")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# RVA
-
-<details>
-
-* Version: 0.0.5
-* GitHub: https://github.com/THERMOSTATS/RVA
-* Source code: https://github.com/cran/RVA
-* Date/Publication: 2021-11-01 21:40:02 UTC
-* Number of recursive dependencies: 210
-
-Run `revdepcheck::cloud_details(, "RVA")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/RVA/new/RVA.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘RVA/DESCRIPTION’ ... OK
-...
-* this is package ‘RVA’ version ‘0.0.5’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘clusterProfiler’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/RVA/old/RVA.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘RVA/DESCRIPTION’ ... OK
-...
-* this is package ‘RVA’ version ‘0.0.5’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘clusterProfiler’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# scCustomize
-
-<details>
-
-* Version: 3.0.1
-* GitHub: https://github.com/samuel-marsh/scCustomize
-* Source code: https://github.com/cran/scCustomize
-* Date/Publication: 2024-12-18 18:40:02 UTC
-* Number of recursive dependencies: 272
-
-Run `revdepcheck::cloud_details(, "scCustomize")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘scCustomize’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/scCustomize/new/scCustomize.Rcheck/00install.out’ for details.
-    ```
-
-*   checking package dependencies ... NOTE
-    ```
-    Package suggested but not available for checking: ‘Nebulosa’
-    ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘scCustomize’ ...
-** package ‘scCustomize’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required
-Execution halted
-ERROR: lazy loading failed for package ‘scCustomize’
-* removing ‘/tmp/workdir/scCustomize/new/scCustomize.Rcheck/scCustomize’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘scCustomize’ ...
-** package ‘scCustomize’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required
-Execution halted
-ERROR: lazy loading failed for package ‘scCustomize’
-* removing ‘/tmp/workdir/scCustomize/old/scCustomize.Rcheck/scCustomize’
-
-
-```
-# scpi
-
-<details>
-
-* Version: 2.2.6
-* GitHub: NA
-* Source code: https://github.com/cran/scpi
-* Date/Publication: 2024-11-11 23:40:02 UTC
-* Number of recursive dependencies: 96
-
-Run `revdepcheck::cloud_details(, "scpi")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘scpi’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/scpi/new/scpi.Rcheck/00install.out’ for details.
-    ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘scpi’ ...
-** package ‘scpi’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** byte-compile and prepare package for lazy loading
-Warning in .recacheSubclasses(def@className, def, env) :
-  undefined subclass "pcorMatrix" of class "ConstVal"; definition not updated
-Warning in .recacheSubclasses(def@className, def, env) :
-...
-Warning in .recacheSubclasses(def@className, def, env) :
-  undefined subclass "pcorMatrix" of class "ConstValORExpr"; definition not updated
-Warning in .recacheSubclasses(def@className, def, env) :
-  undefined subclass "pcorMatrix" of class "ConstValORNULL"; definition not updated
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘scpi’
-* removing ‘/tmp/workdir/scpi/new/scpi.Rcheck/scpi’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘scpi’ ...
-** package ‘scpi’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** byte-compile and prepare package for lazy loading
-Warning in .recacheSubclasses(def@className, def, env) :
-  undefined subclass "pcorMatrix" of class "ConstVal"; definition not updated
-Warning in .recacheSubclasses(def@className, def, env) :
-...
-Warning in .recacheSubclasses(def@className, def, env) :
-  undefined subclass "pcorMatrix" of class "ConstValORExpr"; definition not updated
-Warning in .recacheSubclasses(def@className, def, env) :
-  undefined subclass "pcorMatrix" of class "ConstValORNULL"; definition not updated
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘scpi’
-* removing ‘/tmp/workdir/scpi/old/scpi.Rcheck/scpi’
-
-
-```
-# SCpubr
-
-<details>
-
-* Version: 2.0.2
-* GitHub: https://github.com/enblacar/SCpubr
-* Source code: https://github.com/cran/SCpubr
-* Date/Publication: 2023-10-11 09:50:02 UTC
-* Number of recursive dependencies: 301
-
-Run `revdepcheck::cloud_details(, "SCpubr")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/SCpubr/new/SCpubr.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘SCpubr/DESCRIPTION’ ... OK
-...
-* checking for unstated dependencies in ‘tests’ ... OK
-* checking tests ... OK
-  Running ‘testthat.R’
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... NONE
-  ‘reference_manual.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 2 NOTEs
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/SCpubr/old/SCpubr.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘SCpubr/DESCRIPTION’ ... OK
-...
-* checking for unstated dependencies in ‘tests’ ... OK
-* checking tests ... OK
-  Running ‘testthat.R’
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... NONE
-  ‘reference_manual.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 2 NOTEs
-
-
-
-
-
-```
-# SEERaBomb
-
-<details>
-
-* Version: 2019.2
-* GitHub: NA
-* Source code: https://github.com/cran/SEERaBomb
-* Date/Publication: 2019-12-12 18:50:03 UTC
-* Number of recursive dependencies: 185
-
-Run `revdepcheck::cloud_details(, "SEERaBomb")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘SEERaBomb’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/SEERaBomb/new/SEERaBomb.Rcheck/00install.out’ for details.
-    ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘SEERaBomb’ ...
-** package ‘SEERaBomb’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
-using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include    -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
-gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include    -fpic  -g -O2  -c SEERaBomb_init.c -o SEERaBomb_init.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include    -fpic  -g -O2  -c fillPYM.cpp -o fillPYM.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o SEERaBomb.so RcppExports.o SEERaBomb_init.o fillPYM.o -L/opt/R/4.3.1/lib/R/lib -lR
-...
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘demography’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Execution halted
-ERROR: lazy loading failed for package ‘SEERaBomb’
-* removing ‘/tmp/workdir/SEERaBomb/new/SEERaBomb.Rcheck/SEERaBomb’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘SEERaBomb’ ...
-** package ‘SEERaBomb’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘ontologics’ ...
+** package ‘ontologics’ successfully unpacked and MD5 sums checked
 ** using staged installation
-** libs
-using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
-using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include    -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
-gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include    -fpic  -g -O2  -c SEERaBomb_init.c -o SEERaBomb_init.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include    -fpic  -g -O2  -c fillPYM.cpp -o fillPYM.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o SEERaBomb.so RcppExports.o SEERaBomb_init.o fillPYM.o -L/opt/R/4.3.1/lib/R/lib -lR
-...
 ** R
-** data
-*** moving datasets to lazyload DB
 ** inst
 ** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘demography’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
+Error in dyn.load(file, DLLpath = DLLpath, ...) : 
+  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
+  librdf.so.0: cannot open shared object file: No such file or directory
+Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
 Execution halted
-ERROR: lazy loading failed for package ‘SEERaBomb’
-* removing ‘/tmp/workdir/SEERaBomb/old/SEERaBomb.Rcheck/SEERaBomb’
-
-
-```
-# SensIAT
-
-<details>
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/SensIAT
-* Number of recursive dependencies: 60
-
-Run `revdepcheck::cloud_details(, "SensIAT")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
+ERROR: lazy loading failed for package ‘ontologics’
+* removing ‘/tmp/workdir/ontologics/old/ontologics.Rcheck/ontologics’
 
 
 ```
-# SimplyAgree
+# rdflib
 
 <details>
 
-* Version: 0.2.0
-* GitHub: https://github.com/arcaldwell49/SimplyAgree
-* Source code: https://github.com/cran/SimplyAgree
-* Date/Publication: 2024-03-21 14:20:06 UTC
-* Number of recursive dependencies: 118
+* Version: 0.2.9
+* GitHub: https://github.com/ropensci/rdflib
+* Source code: https://github.com/cran/rdflib
+* Date/Publication: 2024-08-17 06:00:05 UTC
+* Number of recursive dependencies: 92
 
-Run `revdepcheck::cloud_details(, "SimplyAgree")` for more info
+Run `revdepcheck::cloud_details(, "rdflib")` for more info
 
 </details>
 
 ## In both
 
-*   checking whether package ‘SimplyAgree’ can be installed ... ERROR
+*   checking whether package ‘rdflib’ can be installed ... ERROR
     ```
     Installation failed.
-    See ‘/tmp/workdir/SimplyAgree/new/SimplyAgree.Rcheck/00install.out’ for details.
+    See ‘/tmp/workdir/rdflib/new/rdflib.Rcheck/00install.out’ for details.
     ```
 
 ## Installation
@@ -2965,225 +493,61 @@ Run `revdepcheck::cloud_details(, "SimplyAgree")` for more info
 ### Devel
 
 ```
-* installing *source* package ‘SimplyAgree’ ...
-** package ‘SimplyAgree’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘rdflib’ ...
+** package ‘rdflib’ successfully unpacked and MD5 sums checked
 ** using staged installation
 ** R
-** data
-*** moving datasets to lazyload DB
 ** inst
 ** byte-compile and prepare package for lazy loading
-Warning in check_dep_version() :
-  ABI version mismatch: 
-lme4 was built with Matrix ABI version 1
-Current Matrix ABI version is 0
-Please re-install lme4 from source or restore original ‘Matrix’ package
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
+Error in dyn.load(file, DLLpath = DLLpath, ...) : 
+  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
+  librdf.so.0: cannot open shared object file: No such file or directory
+Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
 Execution halted
-ERROR: lazy loading failed for package ‘SimplyAgree’
-* removing ‘/tmp/workdir/SimplyAgree/new/SimplyAgree.Rcheck/SimplyAgree’
+ERROR: lazy loading failed for package ‘rdflib’
+* removing ‘/tmp/workdir/rdflib/new/rdflib.Rcheck/rdflib’
 
 
 ```
 ### CRAN
 
 ```
-* installing *source* package ‘SimplyAgree’ ...
-** package ‘SimplyAgree’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘rdflib’ ...
+** package ‘rdflib’ successfully unpacked and MD5 sums checked
 ** using staged installation
 ** R
-** data
-*** moving datasets to lazyload DB
 ** inst
 ** byte-compile and prepare package for lazy loading
-Warning in check_dep_version() :
-  ABI version mismatch: 
-lme4 was built with Matrix ABI version 1
-Current Matrix ABI version is 0
-Please re-install lme4 from source or restore original ‘Matrix’ package
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
+Error in dyn.load(file, DLLpath = DLLpath, ...) : 
+  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
+  librdf.so.0: cannot open shared object file: No such file or directory
+Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
 Execution halted
-ERROR: lazy loading failed for package ‘SimplyAgree’
-* removing ‘/tmp/workdir/SimplyAgree/old/SimplyAgree.Rcheck/SimplyAgree’
-
-
-```
-# ssdGSA
-
-<details>
-
-* Version: 0.1.1
-* GitHub: NA
-* Source code: https://github.com/cran/ssdGSA
-* Date/Publication: 2024-07-26 23:10:02 UTC
-* Number of recursive dependencies: 174
-
-Run `revdepcheck::cloud_details(, "ssdGSA")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/ssdGSA/new/ssdGSA.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘ssdGSA/DESCRIPTION’ ... OK
-...
-* this is package ‘ssdGSA’ version ‘0.1.1’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘clusterProfiler’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/ssdGSA/old/ssdGSA.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘ssdGSA/DESCRIPTION’ ... OK
-...
-* this is package ‘ssdGSA’ version ‘0.1.1’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘clusterProfiler’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# SSHAARP
-
-<details>
-
-* Version: 2.0.5
-* GitHub: NA
-* Source code: https://github.com/cran/SSHAARP
-* Date/Publication: 2024-12-11 07:50:06 UTC
-* Number of recursive dependencies: 123
-
-Run `revdepcheck::cloud_details(, "SSHAARP")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/SSHAARP/new/SSHAARP.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘SSHAARP/DESCRIPTION’ ... OK
-...
-* checking installed files from ‘inst/doc’ ... OK
-* checking files in ‘vignettes’ ... OK
-* checking examples ... OK
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... OK
-  ‘vignette.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: OK
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/SSHAARP/old/SSHAARP.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘SSHAARP/DESCRIPTION’ ... OK
-...
-* checking installed files from ‘inst/doc’ ... OK
-* checking files in ‘vignettes’ ... OK
-* checking examples ... OK
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... OK
-  ‘vignette.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: OK
-
-
-
+ERROR: lazy loading failed for package ‘rdflib’
+* removing ‘/tmp/workdir/rdflib/old/rdflib.Rcheck/rdflib’
 
 
 ```
-# stabiliser
+# stoRy
 
 <details>
 
-* Version: 1.0.6
-* GitHub: NA
-* Source code: https://github.com/cran/stabiliser
-* Date/Publication: 2023-05-17 11:00:05 UTC
-* Number of recursive dependencies: 151
+* Version: 0.2.2
+* GitHub: https://github.com/theme-ontology/stoRy
+* Source code: https://github.com/cran/stoRy
+* Date/Publication: 2023-06-13 23:10:02 UTC
+* Number of recursive dependencies: 76
 
-Run `revdepcheck::cloud_details(, "stabiliser")` for more info
+Run `revdepcheck::cloud_details(, "stoRy")` for more info
 
 </details>
 
-## In both
+## Newly broken
 
-*   checking whether package ‘stabiliser’ can be installed ... ERROR
+*   checking whether package ‘stoRy’ can be installed ... ERROR
     ```
     Installation failed.
-    See ‘/tmp/workdir/stabiliser/new/stabiliser.Rcheck/00install.out’ for details.
+    See ‘/tmp/workdir/stoRy/new/stoRy.Rcheck/00install.out’ for details.
     ```
 
 ## Installation
@@ -3191,63 +555,77 @@ Run `revdepcheck::cloud_details(, "stabiliser")` for more info
 ### Devel
 
 ```
-* installing *source* package ‘stabiliser’ ...
-** package ‘stabiliser’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘stoRy’ ...
+** package ‘stoRy’ successfully unpacked and MD5 sums checked
 ** using staged installation
 ** R
-** data
-*** moving datasets to lazyload DB
+Warning: namespace ‘stoRy’ is not available and has been replaced
+by .GlobalEnv when processing object ‘background_collection’
 ** inst
 ** byte-compile and prepare package for lazy loading
-Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : 
-  there is no package called ‘maditr’
-Calls: <Anonymous> ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
+Error: object ‘at_depth’ is not exported by 'namespace:purrr'
 Execution halted
-ERROR: lazy loading failed for package ‘stabiliser’
-* removing ‘/tmp/workdir/stabiliser/new/stabiliser.Rcheck/stabiliser’
+ERROR: lazy loading failed for package ‘stoRy’
+* removing ‘/tmp/workdir/stoRy/new/stoRy.Rcheck/stoRy’
 
 
 ```
 ### CRAN
 
 ```
-* installing *source* package ‘stabiliser’ ...
-** package ‘stabiliser’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘stoRy’ ...
+** package ‘stoRy’ successfully unpacked and MD5 sums checked
 ** using staged installation
 ** R
-** data
-*** moving datasets to lazyload DB
 ** inst
 ** byte-compile and prepare package for lazy loading
-Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : 
-  there is no package called ‘maditr’
-Calls: <Anonymous> ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘stabiliser’
-* removing ‘/tmp/workdir/stabiliser/old/stabiliser.Rcheck/stabiliser’
+** help
+*** installing help indices
+*** copying figures
+** building package indices
+** installing vignettes
+** testing if installed package can be loaded from temporary location
+** testing if installed package can be loaded from final location
+** testing if installed package keeps a record of temporary installation path
+* DONE (stoRy)
 
 
 ```
-# tidyseurat
+# tidyjson
 
 <details>
 
-* Version: 0.8.0
-* GitHub: https://github.com/stemangiola/tidyseurat
-* Source code: https://github.com/cran/tidyseurat
-* Date/Publication: 2024-01-10 04:50:02 UTC
-* Number of recursive dependencies: 196
+* Version: 0.3.2
+* GitHub: https://github.com/colearendt/tidyjson
+* Source code: https://github.com/cran/tidyjson
+* Date/Publication: 2023-01-07 00:20:02 UTC
+* Number of recursive dependencies: 93
 
-Run `revdepcheck::cloud_details(, "tidyseurat")` for more info
+Run `revdepcheck::cloud_details(, "tidyjson")` for more info
 
 </details>
 
-## In both
+## Newly broken
 
-*   checking whether package ‘tidyseurat’ can be installed ... ERROR
+*   checking whether package ‘tidyjson’ can be installed ... ERROR
     ```
     Installation failed.
-    See ‘/tmp/workdir/tidyseurat/new/tidyseurat.Rcheck/00install.out’ for details.
+    See ‘/tmp/workdir/tidyjson/new/tidyjson.Rcheck/00install.out’ for details.
+    ```
+
+## Newly fixed
+
+*   checking Rd files ... NOTE
+    ```
+    checkRd: (-1) json_schema.Rd:33: Lost braces; missing escapes or markup?
+        33 |   \item object  -> {"name": <type>} e.g., {"age": 32} -> {"age": "number"}
+           |                    ^
+    checkRd: (-1) json_schema.Rd:33: Lost braces; missing escapes or markup?
+        33 |   \item object  -> {"name": <type>} e.g., {"age": 32} -> {"age": "number"}
+           |                                           ^
+    checkRd: (-1) json_schema.Rd:33: Lost braces; missing escapes or markup?
+        33 |   \item object  -> {"name": <type>} e.g., {"age": 32} -> {"age": "number"}
+           |                                                          ^
     ```
 
 ## Installation
@@ -3255,38 +633,40 @@ Run `revdepcheck::cloud_details(, "tidyseurat")` for more info
 ### Devel
 
 ```
-* installing *source* package ‘tidyseurat’ ...
-** package ‘tidyseurat’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘tidyjson’ ...
+** package ‘tidyjson’ successfully unpacked and MD5 sums checked
 ** using staged installation
 ** R
 ** data
 *** moving datasets to lazyload DB
 ** inst
 ** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
+Error: object ‘at_depth’ is not exported by 'namespace:purrr'
 Execution halted
-ERROR: lazy loading failed for package ‘tidyseurat’
-* removing ‘/tmp/workdir/tidyseurat/new/tidyseurat.Rcheck/tidyseurat’
+ERROR: lazy loading failed for package ‘tidyjson’
+* removing ‘/tmp/workdir/tidyjson/new/tidyjson.Rcheck/tidyjson’
 
 
 ```
 ### CRAN
 
 ```
-* installing *source* package ‘tidyseurat’ ...
-** package ‘tidyseurat’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘tidyjson’ ...
+** package ‘tidyjson’ successfully unpacked and MD5 sums checked
 ** using staged installation
 ** R
 ** data
 *** moving datasets to lazyload DB
 ** inst
 ** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
-Execution halted
-ERROR: lazy loading failed for package ‘tidyseurat’
-* removing ‘/tmp/workdir/tidyseurat/old/tidyseurat.Rcheck/tidyseurat’
+** help
+*** installing help indices
+** building package indices
+** installing vignettes
+** testing if installed package can be loaded from temporary location
+** testing if installed package can be loaded from final location
+** testing if installed package keeps a record of temporary installation path
+* DONE (tidyjson)
 
 
 ```
@@ -3298,7 +678,7 @@ ERROR: lazy loading failed for package ‘tidyseurat’
 * GitHub: https://github.com/alexander-pastukhov/tridim-regression
 * Source code: https://github.com/cran/TriDimRegression
 * Date/Publication: 2023-09-13 14:10:03 UTC
-* Number of recursive dependencies: 98
+* Number of recursive dependencies: 95
 
 Run `revdepcheck::cloud_details(, "TriDimRegression")` for more info
 
@@ -3341,68 +721,4 @@ ERROR: configuration failed for package ‘TriDimRegression’
 * removing ‘/tmp/workdir/TriDimRegression/old/TriDimRegression.Rcheck/TriDimRegression’
 
 
-```
-# WRTDStidal
-
-<details>
-
-* Version: 1.1.4
-* GitHub: https://github.com/fawda123/WRTDStidal
-* Source code: https://github.com/cran/WRTDStidal
-* Date/Publication: 2023-10-20 09:00:11 UTC
-* Number of recursive dependencies: 139
-
-Run `revdepcheck::cloud_details(, "WRTDStidal")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘WRTDStidal’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/WRTDStidal/new/WRTDStidal.Rcheck/00install.out’ for details.
-    ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘WRTDStidal’ ...
-** package ‘WRTDStidal’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘WRTDStidal’
-* removing ‘/tmp/workdir/WRTDStidal/new/WRTDStidal.Rcheck/WRTDStidal’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘WRTDStidal’ ...
-** package ‘WRTDStidal’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘WRTDStidal’
-* removing ‘/tmp/workdir/WRTDStidal/old/WRTDStidal.Rcheck/WRTDStidal’
-
-
 ```
diff --git a/revdep/problems.md b/revdep/problems.md
index e12d244cb..083f6277f 100644
--- a/revdep/problems.md
+++ b/revdep/problems.md
@@ -1,75 +1,343 @@
-# meta
+# CPAT
 
 <details>
 
-* Version: 8.0-2
-* GitHub: https://github.com/guido-s/meta
-* Source code: https://github.com/cran/meta
-* Date/Publication: 2025-01-21 19:20:02 UTC
-* Number of recursive dependencies: 96
+* Version: 0.1.0
+* GitHub: NA
+* Source code: https://github.com/cran/CPAT
+* Date/Publication: 2018-12-25 22:40:08 UTC
+* Number of recursive dependencies: 63
 
-Run `revdepcheck::cloud_details(, "meta")` for more info
+Run `revdepcheck::cloud_details(, "CPAT")` for more info
 
 </details>
 
 ## Newly broken
 
-*   checking installed package size ... NOTE
+*   checking tests ... ERROR
     ```
-      installed size is  5.6Mb
-      sub-directories of 1Mb or more:
-        R      3.5Mb
-        help   1.5Mb
+      Running ‘testthat.R’
+    Running the tests in ‘tests/testthat.R’ failed.
+    Complete output:
+      > library(testthat)
+      > library(CPAT)
+      Package 'CPAT' version 0.1.0
+      Type citation("CPAT") for citing this R package in publications
+      > 
+      > test_check("CPAT")
+      [ FAIL 4 | WARN 0 | SKIP 0 | PASS 97 ]
+    ...
+       1. ├─testthat::expect_equal(...) at test-TestStatisticsFunctions.R:152:3
+       2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
+       3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
+       4. └─CPAT:::stat_hs(...)
+       5.   └─base::vapply(1:length(dat), custom_var, FUN.VALUE = numeric(1))
+       6.     └─CPAT (local) FUN(X[[i]], ...)
+      
+      [ FAIL 4 | WARN 0 | SKIP 0 | PASS 97 ]
+      Error: Test failures
+      Execution halted
     ```
 
 ## In both
 
-*   checking Rd cross-references ... NOTE
+*   checking dependencies in R code ... NOTE
+    ```
+    Namespaces in Imports field not imported from:
+      ‘Rdpack’ ‘grDevices’
+      All declared Imports should be used.
+    ```
+
+# kerastuneR
+
+<details>
+
+* Version: 0.1.0.7
+* GitHub: https://github.com/EagerAI/kerastuneR
+* Source code: https://github.com/cran/kerastuneR
+* Date/Publication: 2024-04-13 13:20:02 UTC
+* Number of recursive dependencies: 109
+
+Run `revdepcheck::cloud_details(, "kerastuneR")` for more info
+
+</details>
+
+## Newly broken
+
+*   checking whether package ‘kerastuneR’ can be installed ... ERROR
+    ```
+    Installation failed.
+    See ‘/tmp/workdir/kerastuneR/new/kerastuneR.Rcheck/00install.out’ for details.
+    ```
+
+## Installation
+
+### Devel
+
+```
+* installing *source* package ‘kerastuneR’ ...
+** package ‘kerastuneR’ successfully unpacked and MD5 sums checked
+** using staged installation
+** R
+** inst
+** byte-compile and prepare package for lazy loading
+Error: object ‘at_depth’ is not exported by 'namespace:purrr'
+Execution halted
+ERROR: lazy loading failed for package ‘kerastuneR’
+* removing ‘/tmp/workdir/kerastuneR/new/kerastuneR.Rcheck/kerastuneR’
+
+
+```
+### CRAN
+
+```
+* installing *source* package ‘kerastuneR’ ...
+** package ‘kerastuneR’ successfully unpacked and MD5 sums checked
+** using staged installation
+** R
+** inst
+** byte-compile and prepare package for lazy loading
+** help
+*** installing help indices
+** building package indices
+** installing vignettes
+** testing if installed package can be loaded from temporary location
+** testing if installed package can be loaded from final location
+** testing if installed package keeps a record of temporary installation path
+* DONE (kerastuneR)
+
+
+```
+# PopED
+
+<details>
+
+* Version: 0.7.0
+* GitHub: https://github.com/andrewhooker/PopED
+* Source code: https://github.com/cran/PopED
+* Date/Publication: 2024-10-07 19:30:02 UTC
+* Number of recursive dependencies: 139
+
+Run `revdepcheck::cloud_details(, "PopED")` for more info
+
+</details>
+
+## Newly broken
+
+*   checking installed package size ... NOTE
     ```
-    Packages unavailable to check Rd xrefs: ‘metasens’, ‘robumeta’
+      installed size is  5.5Mb
+      sub-directories of 1Mb or more:
+        R      1.5Mb
+        doc    1.4Mb
+        test   1.1Mb
     ```
 
-# waywiser
+# quincunx
 
 <details>
 
-* Version: 0.6.0
-* GitHub: https://github.com/ropensci/waywiser
-* Source code: https://github.com/cran/waywiser
-* Date/Publication: 2024-06-27 19:10:03 UTC
-* Number of recursive dependencies: 172
+* Version: 0.1.10
+* GitHub: https://github.com/ramiromagno/quincunx
+* Source code: https://github.com/cran/quincunx
+* Date/Publication: 2025-05-31 17:10:02 UTC
+* Number of recursive dependencies: 89
 
-Run `revdepcheck::cloud_details(, "waywiser")` for more info
+Run `revdepcheck::cloud_details(, "quincunx")` for more info
 
 </details>
 
 ## Newly broken
 
-*   checking running R code from vignettes ... ERROR
-    ```
-    Errors in running code in vignettes:
-    when running code in ‘multi-scale-assessment.Rmd’
-      ...
-      |                                                                            
-      |=================                                                     |  25%
-      |                                                                            
-      |==================                                                    |  25%Warning in unzip(file_loc, exdir = tmp) :
-      error 1 in extracting from zip file
-    Cannot open layer tl_2022_us_county
+*   checking examples ... ERROR
+    ```
+    Running examples in ‘quincunx-Ex.R’ failed
+    The error most likely occurred in:
     
-      When sourcing ‘multi-scale-assessment.R’:
-    Error: Opening layer failed.
+    > ### Name: get_cohorts
+    > ### Title: Get PGS Catalog Cohorts
+    > ### Aliases: get_cohorts
+    > 
+    > ### ** Examples
+    > 
+    > # Get information about specific cohorts by their symbols (acronyms)
+    ...
+     18. │                 └─quincunx:::count(json_string)
+     19. ├─base::loadNamespace(x)
+     20. │ └─base::namespaceImportFrom(...)
+     21. │   └─base::importIntoEnv(impenv, impnames, ns, impvars)
+     22. │     └─base::stop(...)
+     23. └─base::.handleSimpleError(...)
+     24.   └─purrr (local) h(simpleError(msg, call))
+     25.     └─cli::cli_abort(...)
+     26.       └─rlang::abort(...)
     Execution halted
-    
-      ‘multi-scale-assessment.Rmd’ using ‘UTF-8’... failed
-      ‘residual-autocorrelation.Rmd’ using ‘UTF-8’... OK
-      ‘waywiser.Rmd’ using ‘UTF-8’... OK
     ```
 
-## In both
+*   checking tests ... ERROR
+    ```
+      Running ‘testthat.R’
+    Running the tests in ‘tests/testthat.R’ failed.
+    Complete output:
+      > library(testthat)
+      > library(quincunx)
+      > 
+      > test_check("quincunx")
+      [ FAIL 5 | WARN 0 | SKIP 0 | PASS 12 ]
+      
+      ══ Failed tests ════════════════════════════════════════════════════════════════
+    ...
+       3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
+       4. ├─quincunx:::is_paginated(txt)
+       5. │ └─quincunx:::count(json_string)
+       6. └─base::loadNamespace(x)
+       7.   └─base::namespaceImportFrom(...)
+       8.     └─base::importIntoEnv(impenv, impnames, ns, impvars)
+      
+      [ FAIL 5 | WARN 0 | SKIP 0 | PASS 12 ]
+      Error: Test failures
+      Execution halted
+    ```
 
-*   checking data for non-ASCII characters ... NOTE
+# stoRy
+
+<details>
+
+* Version: 0.2.2
+* GitHub: https://github.com/theme-ontology/stoRy
+* Source code: https://github.com/cran/stoRy
+* Date/Publication: 2023-06-13 23:10:02 UTC
+* Number of recursive dependencies: 76
+
+Run `revdepcheck::cloud_details(, "stoRy")` for more info
+
+</details>
+
+## Newly broken
+
+*   checking whether package ‘stoRy’ can be installed ... ERROR
     ```
-      Note: found 1 marked UTF-8 string
+    Installation failed.
+    See ‘/tmp/workdir/stoRy/new/stoRy.Rcheck/00install.out’ for details.
     ```
 
+## Installation
+
+### Devel
+
+```
+* installing *source* package ‘stoRy’ ...
+** package ‘stoRy’ successfully unpacked and MD5 sums checked
+** using staged installation
+** R
+Warning: namespace ‘stoRy’ is not available and has been replaced
+by .GlobalEnv when processing object ‘background_collection’
+** inst
+** byte-compile and prepare package for lazy loading
+Error: object ‘at_depth’ is not exported by 'namespace:purrr'
+Execution halted
+ERROR: lazy loading failed for package ‘stoRy’
+* removing ‘/tmp/workdir/stoRy/new/stoRy.Rcheck/stoRy’
+
+
+```
+### CRAN
+
+```
+* installing *source* package ‘stoRy’ ...
+** package ‘stoRy’ successfully unpacked and MD5 sums checked
+** using staged installation
+** R
+** inst
+** byte-compile and prepare package for lazy loading
+** help
+*** installing help indices
+*** copying figures
+** building package indices
+** installing vignettes
+** testing if installed package can be loaded from temporary location
+** testing if installed package can be loaded from final location
+** testing if installed package keeps a record of temporary installation path
+* DONE (stoRy)
+
+
+```
+# tidyjson
+
+<details>
+
+* Version: 0.3.2
+* GitHub: https://github.com/colearendt/tidyjson
+* Source code: https://github.com/cran/tidyjson
+* Date/Publication: 2023-01-07 00:20:02 UTC
+* Number of recursive dependencies: 93
+
+Run `revdepcheck::cloud_details(, "tidyjson")` for more info
+
+</details>
+
+## Newly broken
+
+*   checking whether package ‘tidyjson’ can be installed ... ERROR
+    ```
+    Installation failed.
+    See ‘/tmp/workdir/tidyjson/new/tidyjson.Rcheck/00install.out’ for details.
+    ```
+
+## Newly fixed
+
+*   checking Rd files ... NOTE
+    ```
+    checkRd: (-1) json_schema.Rd:33: Lost braces; missing escapes or markup?
+        33 |   \item object  -> {"name": <type>} e.g., {"age": 32} -> {"age": "number"}
+           |                    ^
+    checkRd: (-1) json_schema.Rd:33: Lost braces; missing escapes or markup?
+        33 |   \item object  -> {"name": <type>} e.g., {"age": 32} -> {"age": "number"}
+           |                                           ^
+    checkRd: (-1) json_schema.Rd:33: Lost braces; missing escapes or markup?
+        33 |   \item object  -> {"name": <type>} e.g., {"age": 32} -> {"age": "number"}
+           |                                                          ^
+    ```
+
+## Installation
+
+### Devel
+
+```
+* installing *source* package ‘tidyjson’ ...
+** package ‘tidyjson’ successfully unpacked and MD5 sums checked
+** using staged installation
+** R
+** data
+*** moving datasets to lazyload DB
+** inst
+** byte-compile and prepare package for lazy loading
+Error: object ‘at_depth’ is not exported by 'namespace:purrr'
+Execution halted
+ERROR: lazy loading failed for package ‘tidyjson’
+* removing ‘/tmp/workdir/tidyjson/new/tidyjson.Rcheck/tidyjson’
+
+
+```
+### CRAN
+
+```
+* installing *source* package ‘tidyjson’ ...
+** package ‘tidyjson’ successfully unpacked and MD5 sums checked
+** using staged installation
+** R
+** data
+*** moving datasets to lazyload DB
+** inst
+** byte-compile and prepare package for lazy loading
+** help
+*** installing help indices
+** building package indices
+** installing vignettes
+** testing if installed package can be loaded from temporary location
+** testing if installed package can be loaded from final location
+** testing if installed package keeps a record of temporary installation path
+* DONE (tidyjson)
+
+
+```

From 57e432fed90487c11e477b14b841c22c7ee7ce07 Mon Sep 17 00:00:00 2001
From: Hadley Wickham <h.wickham@gmail.com>
Date: Fri, 22 Aug 2025 07:21:53 +1200
Subject: [PATCH 3/3] Re-run revdeps

---
 revdep/README.md   |   27 +-
 revdep/cran.md     |   57 +-
 revdep/failures.md | 2269 ++++++++++----------------------------------
 revdep/problems.md |  367 ++++++-
 4 files changed, 906 insertions(+), 1814 deletions(-)

diff --git a/revdep/README.md b/revdep/README.md
index a69959801..19261ee97 100644
--- a/revdep/README.md
+++ b/revdep/README.md
@@ -1,25 +1,36 @@
 # Revdeps
 
-## Failed to check (11)
+## Failed to check (15)
 
 |package          |version |error  |warning |note |
 |:----------------|:-------|:------|:-------|:----|
+|apa              |?       |       |        |     |
 |arealDB          |0.9.4   |1      |        |     |
 |dsTidyverse      |?       |       |        |     |
 |[kerastuneR](failures.md#kerastuner)|0.1.0.7 |__+1__ |        |     |
-|metabolic        |?       |       |        |     |
 |metajam          |0.3.1   |1      |        |     |
 |nesRdata         |0.3.1   |1      |        |     |
 |ontologics       |0.7.4   |1      |        |     |
 |rdflib           |0.2.9   |1      |        |     |
+|sprtt            |?       |       |        |     |
 |[stoRy](failures.md#story)|0.2.2   |__+1__ |        |     |
+|Surrogate        |?       |       |        |     |
+|tidybins         |?       |       |        |     |
+|tidycomm         |?       |       |        |     |
 |[tidyjson](failures.md#tidyjson)|0.3.2   |__+1__ |        |-1   |
 |TriDimRegression |1.0.2   |1      |        |     |
 
-## New problems (3)
+## New problems (9)
+
+|package                |version |error     |warning |note     |
+|:----------------------|:-------|:---------|:-------|:--------|
+|[admiral](problems.md#admiral)|1.3.1   |          |        |1 __+1__ |
+|[CohortCharacteristics](problems.md#cohortcharacteristics)|1.0.0   |__+1__    |        |2        |
+|[CPAT](problems.md#cpat)|0.1.0   |__+1__    |        |1        |
+|[MeasurementDiagnostics](problems.md#measurementdiagnostics)|0.1.0   |__+1__    |        |         |
+|[omock](problems.md#omock)|0.4.0   |1 __+1__  |        |         |
+|[OmopSketch](problems.md#omopsketch)|0.5.1   |__+2__    |        |1        |
+|[PatientProfiles](problems.md#patientprofiles)|1.4.2   |__+1__    |        |         |
+|[quincunx](problems.md#quincunx)|0.1.10  |__+2__    |        |         |
+|[wbids](problems.md#wbids)|1.0.0   |-1 __+1__ |        |1        |
 
-|package  |version |error  |warning |note   |
-|:--------|:-------|:------|:-------|:------|
-|[CPAT](problems.md#cpat)|0.1.0   |__+1__ |        |1      |
-|[PopED](problems.md#poped)|0.7.0   |       |        |__+1__ |
-|[quincunx](problems.md#quincunx)|0.1.10  |__+2__ |        |       |
diff --git a/revdep/cran.md b/revdep/cran.md
index fcfe15d6e..58096233b 100644
--- a/revdep/cran.md
+++ b/revdep/cran.md
@@ -1,3 +1,58 @@
 ## revdepcheck results
 
-We checked 2042 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. We did not see any news, although we did fail to check 9 packages.
+We checked 2081 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
+
+ * We saw 9 new problems
+ * We failed to check 15 packages
+
+Issues with CRAN packages are summarised below.
+
+### New problems
+(This reports the first line of each new failure)
+
+* admiral
+  checking installed package size ... NOTE
+
+* CohortCharacteristics
+  checking re-building of vignette outputs ... ERROR
+
+* CPAT
+  checking tests ... ERROR
+
+* MeasurementDiagnostics
+  checking re-building of vignette outputs ... ERROR
+
+* omock
+  checking examples ... ERROR
+
+* OmopSketch
+  checking tests ... ERROR
+  checking re-building of vignette outputs ... ERROR
+
+* PatientProfiles
+  checking re-building of vignette outputs ... ERROR
+
+* quincunx
+  checking examples ... ERROR
+  checking tests ... ERROR
+
+* wbids
+  checking examples ... ERROR
+
+### Failed to check
+
+* apa              (NA)
+* arealDB          (NA)
+* dsTidyverse      (NA)
+* kerastuneR       (NA)
+* metajam          (NA)
+* nesRdata         (NA)
+* ontologics       (NA)
+* rdflib           (NA)
+* sprtt            (NA)
+* stoRy            (NA)
+* Surrogate        (NA)
+* tidybins         (NA)
+* tidycomm         (NA)
+* tidyjson         (NA)
+* TriDimRegression (NA)
diff --git a/revdep/failures.md b/revdep/failures.md
index 31baa75a4..6a123a416 100644
--- a/revdep/failures.md
+++ b/revdep/failures.md
@@ -1,80 +1,14 @@
-# arealDB
-
-<details>
-
-* Version: 0.9.4
-* GitHub: https://github.com/luckinet/arealDB
-* Source code: https://github.com/cran/arealDB
-* Date/Publication: 2025-01-20 13:40:05 UTC
-* Number of recursive dependencies: 109
-
-Run `revdepcheck::cloud_details(, "arealDB")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘arealDB’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/arealDB/new/arealDB.Rcheck/00install.out’ for details.
-    ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘arealDB’ ...
-** package ‘arealDB’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) : 
-  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
-  librdf.so.0: cannot open shared object file: No such file or directory
-Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘arealDB’
-* removing ‘/tmp/workdir/arealDB/new/arealDB.Rcheck/arealDB’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘arealDB’ ...
-** package ‘arealDB’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) : 
-  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
-  librdf.so.0: cannot open shared object file: No such file or directory
-Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘arealDB’
-* removing ‘/tmp/workdir/arealDB/old/arealDB.Rcheck/arealDB’
-
-
-```
-# dsTidyverse
+# apa
 
 <details>
 
-* Version: 1.0.4
-* GitHub: NA
-* Source code: https://github.com/cran/dsTidyverse
-* Date/Publication: 2025-02-27 09:40:06 UTC
-* Number of recursive dependencies: 46
+* Version: 0.3.4
+* GitHub: https://github.com/dgromer/apa
+* Source code: https://github.com/cran/apa
+* Date/Publication: 2023-10-06 15:00:02 UTC
+* Number of recursive dependencies: 115
 
-Run `revdepcheck::cloud_details(, "dsTidyverse")` for more info
+Run `revdepcheck::cloud_details(, "apa")` for more info
 
 </details>
 
@@ -83,7 +17,7 @@ Run `revdepcheck::cloud_details(, "dsTidyverse")` for more info
 ### Devel
 
 ```
-* using log directory ‘/tmp/workdir/dsTidyverse/new/dsTidyverse.Rcheck’
+* using log directory ‘/tmp/workdir/apa/new/apa.Rcheck’
 * using R version 4.4.0 (2024-04-24)
 * using platform: x86_64-pc-linux-gnu
 * R was compiled by
@@ -92,1259 +26,74 @@ Run `revdepcheck::cloud_details(, "dsTidyverse")` for more info
 * running under: Ubuntu 24.04.2 LTS
 * using session charset: UTF-8
 * using option ‘--no-manual’
-* checking for file ‘CSCNet/DESCRIPTION’ ... OK
-...
-* this is package ‘CSCNet’ version ‘0.1.2’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘riskRegression’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/CSCNet/old/CSCNet.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘CSCNet/DESCRIPTION’ ... OK
-...
-* this is package ‘CSCNet’ version ‘0.1.2’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘riskRegression’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# dartR.base
-
-<details>
-
-* Version: 0.98
-* GitHub: NA
-* Source code: https://github.com/cran/dartR.base
-* Date/Publication: 2024-09-19 13:20:02 UTC
-* Number of recursive dependencies: 288
-
-Run `revdepcheck::cloud_details(, "dartR.base")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/dartR.base/new/dartR.base.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘dartR.base/DESCRIPTION’ ... OK
-...
-* this is package ‘dartR.base’ version ‘0.98’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘SNPassoc’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/dartR.base/old/dartR.base.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘dartR.base/DESCRIPTION’ ... OK
-...
-* this is package ‘dartR.base’ version ‘0.98’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘SNPassoc’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# dartR.popgen
-
-<details>
-
-* Version: 1.0.0
-* GitHub: NA
-* Source code: https://github.com/cran/dartR.popgen
-* Date/Publication: 2024-06-27 23:20:04 UTC
-* Number of recursive dependencies: 175
-
-Run `revdepcheck::cloud_details(, "dartR.popgen")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/dartR.popgen/new/dartR.popgen.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘dartR.popgen/DESCRIPTION’ ... OK
-...
-* this is package ‘dartR.popgen’ version ‘1.0.0’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘dartR.base’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/dartR.popgen/old/dartR.popgen.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘dartR.popgen/DESCRIPTION’ ... OK
+* checking for file ‘apa/DESCRIPTION’ ... OK
 ...
-* this is package ‘dartR.popgen’ version ‘1.0.0’
+* this is package ‘apa’ version ‘0.3.4’
 * package encoding: UTF-8
 * checking package namespace information ... OK
 * checking package dependencies ... ERROR
-Package required but not available: ‘dartR.base’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# deeptrafo
-
-<details>
-
-* Version: 1.0-0
-* GitHub: https://github.com/neural-structured-additive-learning/deeptrafo
-* Source code: https://github.com/cran/deeptrafo
-* Date/Publication: 2024-12-03 18:40:02 UTC
-* Number of recursive dependencies: 109
-
-Run `revdepcheck::cloud_details(, "deeptrafo")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/deeptrafo/new/deeptrafo.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘deeptrafo/DESCRIPTION’ ... OK
-...
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘mlt’
-
-Packages suggested but not available for checking: 'tram', 'cotram'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/deeptrafo/old/deeptrafo.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘deeptrafo/DESCRIPTION’ ... OK
-...
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘mlt’
-
-Packages suggested but not available for checking: 'tram', 'cotram'
+Package required but not available: ‘MBESS’
 
 See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
 manual.
 * DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# dibble
-
-<details>
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/dibble
-* Number of recursive dependencies: 51
-
-Run `revdepcheck::cloud_details(, "dibble")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# DR.SC
-
-<details>
-
-* Version: 3.4
-* GitHub: https://github.com/feiyoung/DR.SC
-* Source code: https://github.com/cran/DR.SC
-* Date/Publication: 2024-03-19 08:40:02 UTC
-* Number of recursive dependencies: 151
-
-Run `revdepcheck::cloud_details(, "DR.SC")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘DR.SC’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/DR.SC/new/DR.SC.Rcheck/00install.out’ for details.
-    ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘DR.SC’ ...
-** package ‘DR.SC’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
-using C++17
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -DARMA_64BIT_WORD -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -DARMA_64BIT_WORD -fpic  -g -O2  -c getNB_fast.cpp -o getNB_fast.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -DARMA_64BIT_WORD -fpic  -g -O2  -c mt_paral_job.cpp -o mt_paral_job.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -DARMA_64BIT_WORD -fpic  -g -O2  -c mt_paral_job2.cpp -o mt_paral_job2.o
-...
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘DR.SC’
-* removing ‘/tmp/workdir/DR.SC/new/DR.SC.Rcheck/DR.SC’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘DR.SC’ ...
-** package ‘DR.SC’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
-using C++17
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -DARMA_64BIT_WORD -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -DARMA_64BIT_WORD -fpic  -g -O2  -c getNB_fast.cpp -o getNB_fast.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -DARMA_64BIT_WORD -fpic  -g -O2  -c mt_paral_job.cpp -o mt_paral_job.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -DARMA_64BIT_WORD -fpic  -g -O2  -c mt_paral_job2.cpp -o mt_paral_job2.o
-...
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘DR.SC’
-* removing ‘/tmp/workdir/DR.SC/old/DR.SC.Rcheck/DR.SC’
-
-
-```
-# epizootic
-
-<details>
-
-* Version: 1.0.0
-* GitHub: https://github.com/viralemergence/epizootic
-* Source code: https://github.com/cran/epizootic
-* Date/Publication: 2024-10-02 13:10:05 UTC
-* Number of recursive dependencies: 93
-
-Run `revdepcheck::cloud_details(, "epizootic")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘epizootic’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/epizootic/new/epizootic.Rcheck/00install.out’ for details.
-    ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘epizootic’ ...
-** package ‘epizootic’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -c aspatial_siri.cpp -o aspatial_siri.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o epizootic.so RcppExports.o aspatial_siri.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR
-installing to /tmp/workdir/epizootic/new/epizootic.Rcheck/00LOCK-epizootic/00new/epizootic/libs
-** R
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘epizootic’
-* removing ‘/tmp/workdir/epizootic/new/epizootic.Rcheck/epizootic’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘epizootic’ ...
-** package ‘epizootic’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -c aspatial_siri.cpp -o aspatial_siri.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o epizootic.so RcppExports.o aspatial_siri.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR
-installing to /tmp/workdir/epizootic/old/epizootic.Rcheck/00LOCK-epizootic/00new/epizootic/libs
-** R
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘epizootic’
-* removing ‘/tmp/workdir/epizootic/old/epizootic.Rcheck/epizootic’
-
-
-```
-# GeoTox
-
-<details>
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/GeoTox
-* Number of recursive dependencies: 143
-
-Run `revdepcheck::cloud_details(, "GeoTox")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# GseaVis
-
-<details>
-
-* Version: 0.0.5
-* GitHub: https://github.com/junjunlab/GseaVis
-* Source code: https://github.com/cran/GseaVis
-* Date/Publication: 2022-12-20 19:40:07 UTC
-* Number of recursive dependencies: 104
-
-Run `revdepcheck::cloud_details(, "GseaVis")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/GseaVis/new/GseaVis.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘GseaVis/DESCRIPTION’ ... OK
-...
-* this is package ‘GseaVis’ version ‘0.0.5’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘DOSE’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/GseaVis/old/GseaVis.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘GseaVis/DESCRIPTION’ ... OK
-...
-* this is package ‘GseaVis’ version ‘0.0.5’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘DOSE’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# hettx
-
-<details>
-
-* Version: 0.1.3
-* GitHub: https://github.com/bfifield/hettx
-* Source code: https://github.com/cran/hettx
-* Date/Publication: 2023-08-19 22:22:34 UTC
-* Number of recursive dependencies: 84
-
-Run `revdepcheck::cloud_details(, "hettx")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘hettx’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/hettx/new/hettx.Rcheck/00install.out’ for details.
-    ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘hettx’ ...
-** package ‘hettx’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘hettx’
-* removing ‘/tmp/workdir/hettx/new/hettx.Rcheck/hettx’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘hettx’ ...
-** package ‘hettx’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘hettx’
-* removing ‘/tmp/workdir/hettx/old/hettx.Rcheck/hettx’
-
-
-```
-# immcp
-
-<details>
-
-* Version: 1.0.3
-* GitHub: https://github.com/YuanlongHu/immcp
-* Source code: https://github.com/cran/immcp
-* Date/Publication: 2022-05-12 05:50:02 UTC
-* Number of recursive dependencies: 187
-
-Run `revdepcheck::cloud_details(, "immcp")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/immcp/new/immcp.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘immcp/DESCRIPTION’ ... OK
-...
-* this is package ‘immcp’ version ‘1.0.3’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'clusterProfiler', 'DOSE'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/immcp/old/immcp.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘immcp/DESCRIPTION’ ... OK
-...
-* this is package ‘immcp’ version ‘1.0.3’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'clusterProfiler', 'DOSE'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# invivoPKfit
-
-<details>
-
-* Version: 2.0.0
-* GitHub: NA
-* Source code: https://github.com/cran/invivoPKfit
-* Date/Publication: 2025-01-09 14:30:02 UTC
-* Number of recursive dependencies: 172
-
-Run `revdepcheck::cloud_details(, "invivoPKfit")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘invivoPKfit’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/invivoPKfit/new/invivoPKfit.Rcheck/00install.out’ for details.
-    ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘invivoPKfit’ ...
-** package ‘invivoPKfit’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error: object ‘expand1’ is not exported by 'namespace:Matrix'
-Execution halted
-ERROR: lazy loading failed for package ‘invivoPKfit’
-* removing ‘/tmp/workdir/invivoPKfit/new/invivoPKfit.Rcheck/invivoPKfit’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘invivoPKfit’ ...
-** package ‘invivoPKfit’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error: object ‘expand1’ is not exported by 'namespace:Matrix'
-Execution halted
-ERROR: lazy loading failed for package ‘invivoPKfit’
-* removing ‘/tmp/workdir/invivoPKfit/old/invivoPKfit.Rcheck/invivoPKfit’
-
-
-```
-# jsmodule
-
-<details>
-
-* Version: 1.6.1
-* GitHub: https://github.com/jinseob2kim/jsmodule
-* Source code: https://github.com/cran/jsmodule
-* Date/Publication: 2025-01-08 13:10:02 UTC
-* Number of recursive dependencies: 241
-
-Run `revdepcheck::cloud_details(, "jsmodule")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/jsmodule/new/jsmodule.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘jsmodule/DESCRIPTION’ ... OK
-...
-* checking tests ... OK
-  Running ‘testthat.R’
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... OK
-  ‘jsmodule.Rmd’ using ‘UTF-8’... OK
-  ‘jsmodule_subgroup_cmprsk.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: OK
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/jsmodule/old/jsmodule.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
-    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
-* running under: Ubuntu 24.04.2 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘jsmodule/DESCRIPTION’ ... OK
-...
-* checking tests ... OK
-  Running ‘testthat.R’
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... OK
-  ‘jsmodule.Rmd’ using ‘UTF-8’... OK
-  ‘jsmodule_subgroup_cmprsk.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: OK
-
-
-
-
-
-```
-# lnmixsurv
-
-<details>
-
-* Version: 3.1.6
-* GitHub: NA
-* Source code: https://github.com/cran/lnmixsurv
-* Date/Publication: 2024-09-03 15:20:08 UTC
-* Number of recursive dependencies: 195
-
-Run `revdepcheck::cloud_details(, "lnmixsurv")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/lnmixsurv/new/lnmixsurv.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘lnmixsurv/DESCRIPTION’ ... OK
-...
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... OK
-  ‘compare.Rmd’ using ‘UTF-8’... OK
-  ‘expectation_maximization.Rmd’ using ‘UTF-8’... OK
-  ‘intercept_only.Rmd’ using ‘UTF-8’... OK
-  ‘lnmixsurv.Rmd’ using ‘UTF-8’... OK
-  ‘parallel_computation.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 4 NOTEs
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/lnmixsurv/old/lnmixsurv.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘lnmixsurv/DESCRIPTION’ ... OK
-...
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... OK
-  ‘compare.Rmd’ using ‘UTF-8’... OK
-  ‘expectation_maximization.Rmd’ using ‘UTF-8’... OK
-  ‘intercept_only.Rmd’ using ‘UTF-8’... OK
-  ‘lnmixsurv.Rmd’ using ‘UTF-8’... OK
-  ‘parallel_computation.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 4 NOTEs
-
-
-
-
-
-```
-# lsirm12pl
-
-<details>
-
-* Version: 1.3.3
-* GitHub: NA
-* Source code: https://github.com/cran/lsirm12pl
-* Date/Publication: 2024-08-28 23:00:02 UTC
-* Number of recursive dependencies: 123
-
-Run `revdepcheck::cloud_details(, "lsirm12pl")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘lsirm12pl’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/lsirm12pl/new/lsirm12pl.Rcheck/00install.out’ for details.
-    ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘lsirm12pl’ ...
-** package ‘lsirm12pl’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -c lsirm1pl.cpp -o lsirm1pl.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -c lsirm2pl.cpp -o lsirm2pl.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -c lsm.cpp -o lsm.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -c utility_cpp.cpp -o utility_cpp.o
-...
-** R
-** data
-*** moving datasets to lazyload DB
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘lsirm12pl’
-* removing ‘/tmp/workdir/lsirm12pl/new/lsirm12pl.Rcheck/lsirm12pl’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘lsirm12pl’ ...
-** package ‘lsirm12pl’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -c lsirm1pl.cpp -o lsirm1pl.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -c lsirm2pl.cpp -o lsirm2pl.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -c lsm.cpp -o lsm.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -c utility_cpp.cpp -o utility_cpp.o
-...
-** R
-** data
-*** moving datasets to lazyload DB
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘lsirm12pl’
-* removing ‘/tmp/workdir/lsirm12pl/old/lsirm12pl.Rcheck/lsirm12pl’
-
-
-```
-# MantaID
-
-<details>
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/MantaID
-* Number of recursive dependencies: 157
-
-Run `revdepcheck::cloud_details(, "MantaID")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# metajam
-
-<details>
-
-* Version: 0.3.1
-* GitHub: https://github.com/NCEAS/metajam
-* Source code: https://github.com/cran/metajam
-* Date/Publication: 2024-08-16 17:50:02 UTC
-* Number of recursive dependencies: 89
-
-Run `revdepcheck::cloud_details(, "metajam")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘metajam’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/metajam/new/metajam.Rcheck/00install.out’ for details.
-    ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘metajam’ ...
-** package ‘metajam’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) : 
-  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
-  librdf.so.0: cannot open shared object file: No such file or directory
-Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘metajam’
-* removing ‘/tmp/workdir/metajam/new/metajam.Rcheck/metajam’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘metajam’ ...
-** package ‘metajam’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) : 
-  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
-  librdf.so.0: cannot open shared object file: No such file or directory
-Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘metajam’
-* removing ‘/tmp/workdir/metajam/old/metajam.Rcheck/metajam’
-
-
-```
-# nesRdata
-
-<details>
-
-* Version: 0.3.1
-* GitHub: https://github.com/jsta/nesRdata
-* Source code: https://github.com/cran/nesRdata
-* Date/Publication: 2020-04-30 17:20:02 UTC
-* Number of recursive dependencies: 65
-
-Run `revdepcheck::cloud_details(, "nesRdata")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘nesRdata’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/nesRdata/new/nesRdata.Rcheck/00install.out’ for details.
-    ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘nesRdata’ ...
-** package ‘nesRdata’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) : 
-  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
-  librdf.so.0: cannot open shared object file: No such file or directory
-Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘nesRdata’
-* removing ‘/tmp/workdir/nesRdata/new/nesRdata.Rcheck/nesRdata’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘nesRdata’ ...
-** package ‘nesRdata’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) : 
-  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
-  librdf.so.0: cannot open shared object file: No such file or directory
-Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘nesRdata’
-* removing ‘/tmp/workdir/nesRdata/old/nesRdata.Rcheck/nesRdata’
-
-
-```
-# ontologics
-
-<details>
-
-* Version: 0.7.4
-* GitHub: https://github.com/luckinet/ontologics
-* Source code: https://github.com/cran/ontologics
-* Date/Publication: 2025-01-17 16:50:02 UTC
-* Number of recursive dependencies: 79
-
-Run `revdepcheck::cloud_details(, "ontologics")` for more info
-
-</details>
-
-## In both
-
-*   checking whether package ‘ontologics’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/ontologics/new/ontologics.Rcheck/00install.out’ for details.
-    ```
+Status: 1 ERROR
 
-## Installation
 
-### Devel
 
-```
-* installing *source* package ‘ontologics’ ...
-** package ‘ontologics’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) : 
-  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
-  librdf.so.0: cannot open shared object file: No such file or directory
-Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘ontologics’
-* removing ‘/tmp/workdir/ontologics/new/ontologics.Rcheck/ontologics’
 
 
 ```
 ### CRAN
 
 ```
-* installing *source* package ‘ontologics’ ...
-** package ‘ontologics’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) : 
-  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
-  librdf.so.0: cannot open shared object file: No such file or directory
-Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘ontologics’
-* removing ‘/tmp/workdir/ontologics/old/ontologics.Rcheck/ontologics’
+* using log directory ‘/tmp/workdir/apa/old/apa.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.2 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘apa/DESCRIPTION’ ... OK
+...
+* this is package ‘apa’ version ‘0.3.4’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘MBESS’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
 
 
 ```
-# rdflib
+# arealDB
 
 <details>
 
-* Version: 0.2.9
-* GitHub: https://github.com/ropensci/rdflib
-* Source code: https://github.com/cran/rdflib
-* Date/Publication: 2024-08-17 06:00:05 UTC
-* Number of recursive dependencies: 92
+* Version: 0.9.4
+* GitHub: https://github.com/luckinet/arealDB
+* Source code: https://github.com/cran/arealDB
+* Date/Publication: 2025-01-20 13:40:05 UTC
+* Number of recursive dependencies: 109
 
-Run `revdepcheck::cloud_details(, "rdflib")` for more info
+Run `revdepcheck::cloud_details(, "arealDB")` for more info
 
 </details>
 
 ## In both
 
-*   checking whether package ‘rdflib’ can be installed ... ERROR
+*   checking whether package ‘arealDB’ can be installed ... ERROR
     ```
     Installation failed.
-    See ‘/tmp/workdir/rdflib/new/rdflib.Rcheck/00install.out’ for details.
+    See ‘/tmp/workdir/arealDB/new/arealDB.Rcheck/00install.out’ for details.
     ```
 
 ## Installation
@@ -1352,10 +101,12 @@ Run `revdepcheck::cloud_details(, "rdflib")` for more info
 ### Devel
 
 ```
-* installing *source* package ‘rdflib’ ...
-** package ‘rdflib’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘arealDB’ ...
+** package ‘arealDB’ successfully unpacked and MD5 sums checked
 ** using staged installation
 ** R
+** data
+*** moving datasets to lazyload DB
 ** inst
 ** byte-compile and prepare package for lazy loading
 Error in dyn.load(file, DLLpath = DLLpath, ...) : 
@@ -1363,18 +114,20 @@ Error in dyn.load(file, DLLpath = DLLpath, ...) :
   librdf.so.0: cannot open shared object file: No such file or directory
 Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
 Execution halted
-ERROR: lazy loading failed for package ‘rdflib’
-* removing ‘/tmp/workdir/rdflib/new/rdflib.Rcheck/rdflib’
+ERROR: lazy loading failed for package ‘arealDB’
+* removing ‘/tmp/workdir/arealDB/new/arealDB.Rcheck/arealDB’
 
 
 ```
 ### CRAN
 
 ```
-* installing *source* package ‘rdflib’ ...
-** package ‘rdflib’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘arealDB’ ...
+** package ‘arealDB’ successfully unpacked and MD5 sums checked
 ** using staged installation
 ** R
+** data
+*** moving datasets to lazyload DB
 ** inst
 ** byte-compile and prepare package for lazy loading
 Error in dyn.load(file, DLLpath = DLLpath, ...) : 
@@ -1382,57 +135,22 @@ Error in dyn.load(file, DLLpath = DLLpath, ...) :
   librdf.so.0: cannot open shared object file: No such file or directory
 Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
 Execution halted
-ERROR: lazy loading failed for package ‘rdflib’
-* removing ‘/tmp/workdir/rdflib/old/rdflib.Rcheck/rdflib’
+ERROR: lazy loading failed for package ‘arealDB’
+* removing ‘/tmp/workdir/arealDB/old/arealDB.Rcheck/arealDB’
 
 
 ```
-# rmlnomogram
+# dsTidyverse
 
 <details>
 
-* Version: NA
+* Version: 1.0.4
 * GitHub: NA
-* Source code: https://github.com/cran/rmlnomogram
-* Number of recursive dependencies: 181
-
-Run `revdepcheck::cloud_details(, "rmlnomogram")` for more info
-
-</details>
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# robber
-
-<details>
-
-* Version: 0.2.4
-* GitHub: https://github.com/Chabert-Liddell/robber
-* Source code: https://github.com/cran/robber
-* Date/Publication: 2024-02-07 13:50:02 UTC
-* Number of recursive dependencies: 143
+* Source code: https://github.com/cran/dsTidyverse
+* Date/Publication: 2025-02-27 09:40:06 UTC
+* Number of recursive dependencies: 134
 
-Run `revdepcheck::cloud_details(, "robber")` for more info
+Run `revdepcheck::cloud_details(, "dsTidyverse")` for more info
 
 </details>
 
@@ -1441,27 +159,27 @@ Run `revdepcheck::cloud_details(, "robber")` for more info
 ### Devel
 
 ```
-* using log directory ‘/tmp/workdir/robber/new/robber.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
+* using log directory ‘/tmp/workdir/dsTidyverse/new/dsTidyverse.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
 * R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
+    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.2 LTS
 * using session charset: UTF-8
 * using option ‘--no-manual’
-* checking for file ‘robber/DESCRIPTION’ ... OK
+* checking for file ‘dsTidyverse/DESCRIPTION’ ... OK
 ...
+* checking for code/documentation mismatches ... OK
+* checking Rd \usage sections ... OK
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking examples ... NONE
+* checking for unstated dependencies in ‘tests’ ... OK
 * checking tests ... OK
-  Running ‘spelling.R’
   Running ‘testthat.R’
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... OK
-  ‘topological-analysis.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
 * DONE
-Status: OK
+Status: 1 NOTE
 
 
 
@@ -1471,169 +189,113 @@ Status: OK
 ### CRAN
 
 ```
-* using log directory ‘/tmp/workdir/robber/old/robber.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
+* using log directory ‘/tmp/workdir/dsTidyverse/old/dsTidyverse.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
 * R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
+    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.2 LTS
 * using session charset: UTF-8
 * using option ‘--no-manual’
-* checking for file ‘robber/DESCRIPTION’ ... OK
+* checking for file ‘dsTidyverse/DESCRIPTION’ ... OK
 ...
+* checking for code/documentation mismatches ... OK
+* checking Rd \usage sections ... OK
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking examples ... NONE
+* checking for unstated dependencies in ‘tests’ ... OK
 * checking tests ... OK
-  Running ‘spelling.R’
   Running ‘testthat.R’
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... OK
-  ‘topological-analysis.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
 * DONE
-Status: OK
+Status: 1 NOTE
 
 
 
 
 
 ```
-# rplec
+# kerastuneR
 
 <details>
 
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/rplec
-* Number of recursive dependencies: 122
+* Version: 0.1.0.7
+* GitHub: https://github.com/EagerAI/kerastuneR
+* Source code: https://github.com/cran/kerastuneR
+* Date/Publication: 2024-04-13 13:20:02 UTC
+* Number of recursive dependencies: 109
 
-Run `revdepcheck::cloud_details(, "rplec")` for more info
+Run `revdepcheck::cloud_details(, "kerastuneR")` for more info
 
 </details>
 
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
+## Newly broken
 
+*   checking whether package ‘kerastuneR’ can be installed ... ERROR
+    ```
+    Installation failed.
+    See ‘/tmp/workdir/kerastuneR/new/kerastuneR.Rcheck/00install.out’ for details.
+    ```
 
-```
-# RVA
-
-<details>
-
-* Version: 0.0.5
-* GitHub: https://github.com/THERMOSTATS/RVA
-* Source code: https://github.com/cran/RVA
-* Date/Publication: 2021-11-01 21:40:02 UTC
-* Number of recursive dependencies: 210
-
-Run `revdepcheck::cloud_details(, "RVA")` for more info
-
-</details>
-
-## Error before installation
+## Installation
 
 ### Devel
 
 ```
-* using log directory ‘/tmp/workdir/RVA/new/RVA.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘RVA/DESCRIPTION’ ... OK
-...
-* this is package ‘RVA’ version ‘0.0.5’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘clusterProfiler’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
+* installing *source* package ‘kerastuneR’ ...
+** package ‘kerastuneR’ successfully unpacked and MD5 sums checked
+** using staged installation
+** R
+** inst
+** byte-compile and prepare package for lazy loading
+Error: object ‘at_depth’ is not exported by 'namespace:purrr'
+Execution halted
+ERROR: lazy loading failed for package ‘kerastuneR’
+* removing ‘/tmp/workdir/kerastuneR/new/kerastuneR.Rcheck/kerastuneR’
 
 
 ```
 ### CRAN
 
 ```
-* using log directory ‘/tmp/workdir/RVA/old/RVA.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘RVA/DESCRIPTION’ ... OK
-...
-* this is package ‘RVA’ version ‘0.0.5’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘clusterProfiler’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
+* installing *source* package ‘kerastuneR’ ...
+** package ‘kerastuneR’ successfully unpacked and MD5 sums checked
+** using staged installation
+** R
+** inst
+** byte-compile and prepare package for lazy loading
+** help
+*** installing help indices
+** building package indices
+** installing vignettes
+** testing if installed package can be loaded from temporary location
+** testing if installed package can be loaded from final location
+** testing if installed package keeps a record of temporary installation path
+* DONE (kerastuneR)
 
 
 ```
-# scCustomize
+# metajam
 
 <details>
 
-* Version: 3.0.1
-* GitHub: https://github.com/samuel-marsh/scCustomize
-* Source code: https://github.com/cran/scCustomize
-* Date/Publication: 2024-12-18 18:40:02 UTC
-* Number of recursive dependencies: 272
+* Version: 0.3.1
+* GitHub: https://github.com/NCEAS/metajam
+* Source code: https://github.com/cran/metajam
+* Date/Publication: 2024-08-16 17:50:02 UTC
+* Number of recursive dependencies: 89
 
-Run `revdepcheck::cloud_details(, "scCustomize")` for more info
+Run `revdepcheck::cloud_details(, "metajam")` for more info
 
 </details>
 
 ## In both
 
-*   checking whether package ‘scCustomize’ can be installed ... ERROR
+*   checking whether package ‘metajam’ can be installed ... ERROR
     ```
     Installation failed.
-    See ‘/tmp/workdir/scCustomize/new/scCustomize.Rcheck/00install.out’ for details.
-    ```
-
-*   checking package dependencies ... NOTE
-    ```
-    Package suggested but not available for checking: ‘Nebulosa’
+    See ‘/tmp/workdir/metajam/new/metajam.Rcheck/00install.out’ for details.
     ```
 
 ## Installation
@@ -1641,59 +303,61 @@ Run `revdepcheck::cloud_details(, "scCustomize")` for more info
 ### Devel
 
 ```
-* installing *source* package ‘scCustomize’ ...
-** package ‘scCustomize’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘metajam’ ...
+** package ‘metajam’ successfully unpacked and MD5 sums checked
 ** using staged installation
 ** R
-** data
-*** moving datasets to lazyload DB
+** inst
 ** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required
+Error in dyn.load(file, DLLpath = DLLpath, ...) : 
+  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
+  librdf.so.0: cannot open shared object file: No such file or directory
+Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
 Execution halted
-ERROR: lazy loading failed for package ‘scCustomize’
-* removing ‘/tmp/workdir/scCustomize/new/scCustomize.Rcheck/scCustomize’
+ERROR: lazy loading failed for package ‘metajam’
+* removing ‘/tmp/workdir/metajam/new/metajam.Rcheck/metajam’
 
 
 ```
 ### CRAN
 
 ```
-* installing *source* package ‘scCustomize’ ...
-** package ‘scCustomize’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘metajam’ ...
+** package ‘metajam’ successfully unpacked and MD5 sums checked
 ** using staged installation
 ** R
-** data
-*** moving datasets to lazyload DB
+** inst
 ** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required
+Error in dyn.load(file, DLLpath = DLLpath, ...) : 
+  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
+  librdf.so.0: cannot open shared object file: No such file or directory
+Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
 Execution halted
-ERROR: lazy loading failed for package ‘scCustomize’
-* removing ‘/tmp/workdir/scCustomize/old/scCustomize.Rcheck/scCustomize’
+ERROR: lazy loading failed for package ‘metajam’
+* removing ‘/tmp/workdir/metajam/old/metajam.Rcheck/metajam’
 
 
 ```
-# scpi
+# nesRdata
 
 <details>
 
-* Version: 2.2.6
-* GitHub: NA
-* Source code: https://github.com/cran/scpi
-* Date/Publication: 2024-11-11 23:40:02 UTC
-* Number of recursive dependencies: 96
+* Version: 0.3.1
+* GitHub: https://github.com/jsta/nesRdata
+* Source code: https://github.com/cran/nesRdata
+* Date/Publication: 2020-04-30 17:20:02 UTC
+* Number of recursive dependencies: 65
 
-Run `revdepcheck::cloud_details(, "scpi")` for more info
+Run `revdepcheck::cloud_details(, "nesRdata")` for more info
 
 </details>
 
 ## In both
 
-*   checking whether package ‘scpi’ can be installed ... ERROR
+*   checking whether package ‘nesRdata’ can be installed ... ERROR
     ```
     Installation failed.
-    See ‘/tmp/workdir/scpi/new/scpi.Rcheck/00install.out’ for details.
+    See ‘/tmp/workdir/nesRdata/new/nesRdata.Rcheck/00install.out’ for details.
     ```
 
 ## Installation
@@ -1701,153 +365,127 @@ Run `revdepcheck::cloud_details(, "scpi")` for more info
 ### Devel
 
 ```
-* installing *source* package ‘scpi’ ...
-** package ‘scpi’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘nesRdata’ ...
+** package ‘nesRdata’ successfully unpacked and MD5 sums checked
 ** using staged installation
 ** R
 ** data
 *** moving datasets to lazyload DB
+** inst
 ** byte-compile and prepare package for lazy loading
-Warning in .recacheSubclasses(def@className, def, env) :
-  undefined subclass "pcorMatrix" of class "ConstVal"; definition not updated
-Warning in .recacheSubclasses(def@className, def, env) :
-...
-Warning in .recacheSubclasses(def@className, def, env) :
-  undefined subclass "pcorMatrix" of class "ConstValORExpr"; definition not updated
-Warning in .recacheSubclasses(def@className, def, env) :
-  undefined subclass "pcorMatrix" of class "ConstValORNULL"; definition not updated
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
+Error in dyn.load(file, DLLpath = DLLpath, ...) : 
+  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
+  librdf.so.0: cannot open shared object file: No such file or directory
+Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
 Execution halted
-ERROR: lazy loading failed for package ‘scpi’
-* removing ‘/tmp/workdir/scpi/new/scpi.Rcheck/scpi’
+ERROR: lazy loading failed for package ‘nesRdata’
+* removing ‘/tmp/workdir/nesRdata/new/nesRdata.Rcheck/nesRdata’
 
 
 ```
 ### CRAN
 
 ```
-* installing *source* package ‘scpi’ ...
-** package ‘scpi’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘nesRdata’ ...
+** package ‘nesRdata’ successfully unpacked and MD5 sums checked
 ** using staged installation
 ** R
 ** data
 *** moving datasets to lazyload DB
+** inst
 ** byte-compile and prepare package for lazy loading
-Warning in .recacheSubclasses(def@className, def, env) :
-  undefined subclass "pcorMatrix" of class "ConstVal"; definition not updated
-Warning in .recacheSubclasses(def@className, def, env) :
-...
-Warning in .recacheSubclasses(def@className, def, env) :
-  undefined subclass "pcorMatrix" of class "ConstValORExpr"; definition not updated
-Warning in .recacheSubclasses(def@className, def, env) :
-  undefined subclass "pcorMatrix" of class "ConstValORNULL"; definition not updated
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
+Error in dyn.load(file, DLLpath = DLLpath, ...) : 
+  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
+  librdf.so.0: cannot open shared object file: No such file or directory
+Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
 Execution halted
-ERROR: lazy loading failed for package ‘scpi’
-* removing ‘/tmp/workdir/scpi/old/scpi.Rcheck/scpi’
+ERROR: lazy loading failed for package ‘nesRdata’
+* removing ‘/tmp/workdir/nesRdata/old/nesRdata.Rcheck/nesRdata’
 
 
 ```
-# SCpubr
+# ontologics
 
 <details>
 
-* Version: 2.0.2
-* GitHub: https://github.com/enblacar/SCpubr
-* Source code: https://github.com/cran/SCpubr
-* Date/Publication: 2023-10-11 09:50:02 UTC
-* Number of recursive dependencies: 301
+* Version: 0.7.4
+* GitHub: https://github.com/luckinet/ontologics
+* Source code: https://github.com/cran/ontologics
+* Date/Publication: 2025-01-17 16:50:02 UTC
+* Number of recursive dependencies: 79
 
-Run `revdepcheck::cloud_details(, "SCpubr")` for more info
+Run `revdepcheck::cloud_details(, "ontologics")` for more info
 
 </details>
 
-## Error before installation
-
-### Devel
+## In both
 
-```
-* using log directory ‘/tmp/workdir/SCpubr/new/SCpubr.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘SCpubr/DESCRIPTION’ ... OK
-...
-* checking for unstated dependencies in ‘tests’ ... OK
-* checking tests ... OK
-  Running ‘testthat.R’
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... NONE
-  ‘reference_manual.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 2 NOTEs
+*   checking whether package ‘ontologics’ can be installed ... ERROR
+    ```
+    Installation failed.
+    See ‘/tmp/workdir/ontologics/new/ontologics.Rcheck/00install.out’ for details.
+    ```
 
+## Installation
 
+### Devel
 
+```
+* installing *source* package ‘ontologics’ ...
+** package ‘ontologics’ successfully unpacked and MD5 sums checked
+** using staged installation
+** R
+** inst
+** byte-compile and prepare package for lazy loading
+Error in dyn.load(file, DLLpath = DLLpath, ...) : 
+  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
+  librdf.so.0: cannot open shared object file: No such file or directory
+Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
+Execution halted
+ERROR: lazy loading failed for package ‘ontologics’
+* removing ‘/tmp/workdir/ontologics/new/ontologics.Rcheck/ontologics’
 
 
 ```
 ### CRAN
 
 ```
-* using log directory ‘/tmp/workdir/SCpubr/old/SCpubr.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘SCpubr/DESCRIPTION’ ... OK
-...
-* checking for unstated dependencies in ‘tests’ ... OK
-* checking tests ... OK
-  Running ‘testthat.R’
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... NONE
-  ‘reference_manual.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 2 NOTEs
-
-
-
+* installing *source* package ‘ontologics’ ...
+** package ‘ontologics’ successfully unpacked and MD5 sums checked
+** using staged installation
+** R
+** inst
+** byte-compile and prepare package for lazy loading
+Error in dyn.load(file, DLLpath = DLLpath, ...) : 
+  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
+  librdf.so.0: cannot open shared object file: No such file or directory
+Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
+Execution halted
+ERROR: lazy loading failed for package ‘ontologics’
+* removing ‘/tmp/workdir/ontologics/old/ontologics.Rcheck/ontologics’
 
 
 ```
-# SEERaBomb
+# rdflib
 
 <details>
 
-* Version: 2019.2
-* GitHub: NA
-* Source code: https://github.com/cran/SEERaBomb
-* Date/Publication: 2019-12-12 18:50:03 UTC
-* Number of recursive dependencies: 185
+* Version: 0.2.9
+* GitHub: https://github.com/ropensci/rdflib
+* Source code: https://github.com/cran/rdflib
+* Date/Publication: 2024-08-17 06:00:05 UTC
+* Number of recursive dependencies: 92
 
-Run `revdepcheck::cloud_details(, "SEERaBomb")` for more info
+Run `revdepcheck::cloud_details(, "rdflib")` for more info
 
 </details>
 
 ## In both
 
-*   checking whether package ‘SEERaBomb’ can be installed ... ERROR
+*   checking whether package ‘rdflib’ can be installed ... ERROR
     ```
     Installation failed.
-    See ‘/tmp/workdir/SEERaBomb/new/SEERaBomb.Rcheck/00install.out’ for details.
+    See ‘/tmp/workdir/rdflib/new/rdflib.Rcheck/00install.out’ for details.
     ```
 
 ## Installation
@@ -1855,67 +493,52 @@ Run `revdepcheck::cloud_details(, "SEERaBomb")` for more info
 ### Devel
 
 ```
-* installing *source* package ‘SEERaBomb’ ...
-** package ‘SEERaBomb’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘rdflib’ ...
+** package ‘rdflib’ successfully unpacked and MD5 sums checked
 ** using staged installation
-** libs
-using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
-using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include    -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
-gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include    -fpic  -g -O2  -c SEERaBomb_init.c -o SEERaBomb_init.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include    -fpic  -g -O2  -c fillPYM.cpp -o fillPYM.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o SEERaBomb.so RcppExports.o SEERaBomb_init.o fillPYM.o -L/opt/R/4.3.1/lib/R/lib -lR
-...
 ** R
-** data
-*** moving datasets to lazyload DB
 ** inst
 ** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘demography’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
+Error in dyn.load(file, DLLpath = DLLpath, ...) : 
+  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
+  librdf.so.0: cannot open shared object file: No such file or directory
+Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
 Execution halted
-ERROR: lazy loading failed for package ‘SEERaBomb’
-* removing ‘/tmp/workdir/SEERaBomb/new/SEERaBomb.Rcheck/SEERaBomb’
+ERROR: lazy loading failed for package ‘rdflib’
+* removing ‘/tmp/workdir/rdflib/new/rdflib.Rcheck/rdflib’
 
 
 ```
 ### CRAN
 
 ```
-* installing *source* package ‘SEERaBomb’ ...
-** package ‘SEERaBomb’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘rdflib’ ...
+** package ‘rdflib’ successfully unpacked and MD5 sums checked
 ** using staged installation
-** libs
-using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
-using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include    -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
-gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include    -fpic  -g -O2  -c SEERaBomb_init.c -o SEERaBomb_init.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG  -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include    -fpic  -g -O2  -c fillPYM.cpp -o fillPYM.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o SEERaBomb.so RcppExports.o SEERaBomb_init.o fillPYM.o -L/opt/R/4.3.1/lib/R/lib -lR
-...
 ** R
-** data
-*** moving datasets to lazyload DB
 ** inst
 ** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘demography’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
+Error in dyn.load(file, DLLpath = DLLpath, ...) : 
+  unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so':
+  librdf.so.0: cannot open shared object file: No such file or directory
+Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
 Execution halted
-ERROR: lazy loading failed for package ‘SEERaBomb’
-* removing ‘/tmp/workdir/SEERaBomb/old/SEERaBomb.Rcheck/SEERaBomb’
+ERROR: lazy loading failed for package ‘rdflib’
+* removing ‘/tmp/workdir/rdflib/old/rdflib.Rcheck/rdflib’
 
 
 ```
-# SensIAT
+# sprtt
 
 <details>
 
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/SensIAT
-* Number of recursive dependencies: 60
+* Version: 0.2.0
+* GitHub: https://github.com/MeikeSteinhilber/sprtt
+* Source code: https://github.com/cran/sprtt
+* Date/Publication: 2023-07-06 13:50:02 UTC
+* Number of recursive dependencies: 146
 
-Run `revdepcheck::cloud_details(, "SensIAT")` for more info
+Run `revdepcheck::cloud_details(, "sprtt")` for more info
 
 </details>
 
@@ -1924,7 +547,27 @@ Run `revdepcheck::cloud_details(, "SensIAT")` for more info
 ### Devel
 
 ```
+* using log directory ‘/tmp/workdir/sprtt/new/sprtt.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.2 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘sprtt/DESCRIPTION’ ... OK
+...
+* this is package ‘sprtt’ version ‘0.2.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘MBESS’
 
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
 
 
 
@@ -1934,33 +577,53 @@ Run `revdepcheck::cloud_details(, "SensIAT")` for more info
 ### CRAN
 
 ```
+* using log directory ‘/tmp/workdir/sprtt/old/sprtt.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.2 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘sprtt/DESCRIPTION’ ... OK
+...
+* this is package ‘sprtt’ version ‘0.2.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘MBESS’
 
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
 
 
 
 
 
 ```
-# SimplyAgree
+# stoRy
 
 <details>
 
-* Version: 0.2.0
-* GitHub: https://github.com/arcaldwell49/SimplyAgree
-* Source code: https://github.com/cran/SimplyAgree
-* Date/Publication: 2024-03-21 14:20:06 UTC
-* Number of recursive dependencies: 118
+* Version: 0.2.2
+* GitHub: https://github.com/theme-ontology/stoRy
+* Source code: https://github.com/cran/stoRy
+* Date/Publication: 2023-06-13 23:10:02 UTC
+* Number of recursive dependencies: 76
 
-Run `revdepcheck::cloud_details(, "SimplyAgree")` for more info
+Run `revdepcheck::cloud_details(, "stoRy")` for more info
 
 </details>
 
-## In both
+## Newly broken
 
-*   checking whether package ‘SimplyAgree’ can be installed ... ERROR
+*   checking whether package ‘stoRy’ can be installed ... ERROR
     ```
     Installation failed.
-    See ‘/tmp/workdir/SimplyAgree/new/SimplyAgree.Rcheck/00install.out’ for details.
+    See ‘/tmp/workdir/stoRy/new/stoRy.Rcheck/00install.out’ for details.
     ```
 
 ## Installation
@@ -1968,64 +631,53 @@ Run `revdepcheck::cloud_details(, "SimplyAgree")` for more info
 ### Devel
 
 ```
-* installing *source* package ‘SimplyAgree’ ...
-** package ‘SimplyAgree’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘stoRy’ ...
+** package ‘stoRy’ successfully unpacked and MD5 sums checked
 ** using staged installation
 ** R
-** data
-*** moving datasets to lazyload DB
+Warning: namespace ‘stoRy’ is not available and has been replaced
+by .GlobalEnv when processing object ‘background_collection’
 ** inst
 ** byte-compile and prepare package for lazy loading
-Warning in check_dep_version() :
-  ABI version mismatch: 
-lme4 was built with Matrix ABI version 1
-Current Matrix ABI version is 0
-Please re-install lme4 from source or restore original ‘Matrix’ package
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
+Error: object ‘at_depth’ is not exported by 'namespace:purrr'
 Execution halted
-ERROR: lazy loading failed for package ‘SimplyAgree’
-* removing ‘/tmp/workdir/SimplyAgree/new/SimplyAgree.Rcheck/SimplyAgree’
+ERROR: lazy loading failed for package ‘stoRy’
+* removing ‘/tmp/workdir/stoRy/new/stoRy.Rcheck/stoRy’
 
 
 ```
 ### CRAN
 
 ```
-* installing *source* package ‘SimplyAgree’ ...
-** package ‘SimplyAgree’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘stoRy’ ...
+** package ‘stoRy’ successfully unpacked and MD5 sums checked
 ** using staged installation
 ** R
-** data
-*** moving datasets to lazyload DB
 ** inst
 ** byte-compile and prepare package for lazy loading
-Warning in check_dep_version() :
-  ABI version mismatch: 
-lme4 was built with Matrix ABI version 1
-Current Matrix ABI version is 0
-Please re-install lme4 from source or restore original ‘Matrix’ package
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : 
-  namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘SimplyAgree’
-* removing ‘/tmp/workdir/SimplyAgree/old/SimplyAgree.Rcheck/SimplyAgree’
+** help
+*** installing help indices
+*** copying figures
+** building package indices
+** installing vignettes
+** testing if installed package can be loaded from temporary location
+** testing if installed package can be loaded from final location
+** testing if installed package keeps a record of temporary installation path
+* DONE (stoRy)
 
 
 ```
-# ssdGSA
+# Surrogate
 
 <details>
 
-* Version: 0.1.1
-* GitHub: NA
-* Source code: https://github.com/cran/ssdGSA
-* Date/Publication: 2024-07-26 23:10:02 UTC
-* Number of recursive dependencies: 174
+* Version: 3.4.1
+* GitHub: https://github.com/florianstijven/Surrogate-development
+* Source code: https://github.com/cran/Surrogate
+* Date/Publication: 2025-04-29 04:40:02 UTC
+* Number of recursive dependencies: 192
 
-Run `revdepcheck::cloud_details(, "ssdGSA")` for more info
+Run `revdepcheck::cloud_details(, "Surrogate")` for more info
 
 </details>
 
@@ -2034,22 +686,22 @@ Run `revdepcheck::cloud_details(, "ssdGSA")` for more info
 ### Devel
 
 ```
-* using log directory ‘/tmp/workdir/ssdGSA/new/ssdGSA.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
+* using log directory ‘/tmp/workdir/Surrogate/new/Surrogate.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
 * R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
+    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.2 LTS
 * using session charset: UTF-8
 * using option ‘--no-manual’
-* checking for file ‘ssdGSA/DESCRIPTION’ ... OK
+* checking for file ‘Surrogate/DESCRIPTION’ ... OK
 ...
-* this is package ‘ssdGSA’ version ‘0.1.1’
+* this is package ‘Surrogate’ version ‘3.4.1’
 * package encoding: UTF-8
 * checking package namespace information ... OK
 * checking package dependencies ... ERROR
-Package required but not available: ‘clusterProfiler’
+Package required but not available: ‘MBESS’
 
 See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
 manual.
@@ -2064,22 +716,22 @@ Status: 1 ERROR
 ### CRAN
 
 ```
-* using log directory ‘/tmp/workdir/ssdGSA/old/ssdGSA.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
+* using log directory ‘/tmp/workdir/Surrogate/old/Surrogate.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
 * R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
+    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.2 LTS
 * using session charset: UTF-8
 * using option ‘--no-manual’
-* checking for file ‘ssdGSA/DESCRIPTION’ ... OK
+* checking for file ‘Surrogate/DESCRIPTION’ ... OK
 ...
-* this is package ‘ssdGSA’ version ‘0.1.1’
+* this is package ‘Surrogate’ version ‘3.4.1’
 * package encoding: UTF-8
 * checking package namespace information ... OK
 * checking package dependencies ... ERROR
-Package required but not available: ‘clusterProfiler’
+Package required but not available: ‘MBESS’
 
 See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
 manual.
@@ -2091,17 +743,17 @@ Status: 1 ERROR
 
 
 ```
-# SSHAARP
+# tidybins
 
 <details>
 
-* Version: 2.0.5
-* GitHub: NA
-* Source code: https://github.com/cran/SSHAARP
-* Date/Publication: 2024-12-11 07:50:06 UTC
-* Number of recursive dependencies: 123
+* Version: 0.1.1
+* GitHub: https://github.com/Harrison4192/tidybins
+* Source code: https://github.com/cran/tidybins
+* Date/Publication: 2024-06-12 04:50:02 UTC
+* Number of recursive dependencies: 222
 
-Run `revdepcheck::cloud_details(, "SSHAARP")` for more info
+Run `revdepcheck::cloud_details(, "tidybins")` for more info
 
 </details>
 
@@ -2110,27 +762,27 @@ Run `revdepcheck::cloud_details(, "SSHAARP")` for more info
 ### Devel
 
 ```
-* using log directory ‘/tmp/workdir/SSHAARP/new/SSHAARP.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
+* using log directory ‘/tmp/workdir/tidybins/new/tidybins.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
 * R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
+    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.2 LTS
 * using session charset: UTF-8
 * using option ‘--no-manual’
-* checking for file ‘SSHAARP/DESCRIPTION’ ... OK
+* checking for file ‘tidybins/DESCRIPTION’ ... OK
 ...
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
 * checking installed files from ‘inst/doc’ ... OK
 * checking files in ‘vignettes’ ... OK
 * checking examples ... OK
 * checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... OK
-  ‘vignette.Rmd’ using ‘UTF-8’... OK
+* checking package vignettes ... OK
 * checking re-building of vignette outputs ... OK
 * DONE
-Status: OK
+Status: 3 NOTEs
 
 
 
@@ -2140,117 +792,144 @@ Status: OK
 ### CRAN
 
 ```
-* using log directory ‘/tmp/workdir/SSHAARP/old/SSHAARP.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
+* using log directory ‘/tmp/workdir/tidybins/old/tidybins.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
 * R was compiled by
-    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
-* running under: Ubuntu 24.04.1 LTS
+    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.2 LTS
 * using session charset: UTF-8
 * using option ‘--no-manual’
-* checking for file ‘SSHAARP/DESCRIPTION’ ... OK
+* checking for file ‘tidybins/DESCRIPTION’ ... OK
 ...
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
 * checking installed files from ‘inst/doc’ ... OK
 * checking files in ‘vignettes’ ... OK
 * checking examples ... OK
 * checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... OK
-  ‘vignette.Rmd’ using ‘UTF-8’... OK
+* checking package vignettes ... OK
 * checking re-building of vignette outputs ... OK
 * DONE
-Status: OK
+Status: 3 NOTEs
 
 
 
 
 
 ```
-# stabiliser
+# tidycomm
 
 <details>
 
-* Version: 1.0.6
-* GitHub: NA
-* Source code: https://github.com/cran/stabiliser
-* Date/Publication: 2023-05-17 11:00:05 UTC
-* Number of recursive dependencies: 151
+* Version: 0.4.1
+* GitHub: https://github.com/joon-e/tidycomm
+* Source code: https://github.com/cran/tidycomm
+* Date/Publication: 2024-02-22 12:20:02 UTC
+* Number of recursive dependencies: 141
 
-Run `revdepcheck::cloud_details(, "stabiliser")` for more info
+Run `revdepcheck::cloud_details(, "tidycomm")` for more info
 
 </details>
 
-## In both
-
-*   checking whether package ‘stabiliser’ can be installed ... ERROR
-    ```
-    Installation failed.
-    See ‘/tmp/workdir/stabiliser/new/stabiliser.Rcheck/00install.out’ for details.
-    ```
-
-## Installation
+## Error before installation
 
 ### Devel
 
 ```
-* installing *source* package ‘stabiliser’ ...
-** package ‘stabiliser’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : 
-  there is no package called ‘maditr’
-Calls: <Anonymous> ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘stabiliser’
-* removing ‘/tmp/workdir/stabiliser/new/stabiliser.Rcheck/stabiliser’
+* using log directory ‘/tmp/workdir/tidycomm/new/tidycomm.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.2 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘tidycomm/DESCRIPTION’ ... OK
+...
+* this is package ‘tidycomm’ version ‘0.4.1’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘MBESS’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
 
 
 ```
 ### CRAN
 
 ```
-* installing *source* package ‘stabiliser’ ...
-** package ‘stabiliser’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : 
-  there is no package called ‘maditr’
-Calls: <Anonymous> ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘stabiliser’
-* removing ‘/tmp/workdir/stabiliser/old/stabiliser.Rcheck/stabiliser’
+* using log directory ‘/tmp/workdir/tidycomm/old/tidycomm.Rcheck’
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.2 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘tidycomm/DESCRIPTION’ ... OK
+...
+* this is package ‘tidycomm’ version ‘0.4.1’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘MBESS’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
 
 
 ```
-# tidyseurat
+# tidyjson
 
 <details>
 
-* Version: 0.8.0
-* GitHub: https://github.com/stemangiola/tidyseurat
-* Source code: https://github.com/cran/tidyseurat
-* Date/Publication: 2024-01-10 04:50:02 UTC
-* Number of recursive dependencies: 196
+* Version: 0.3.2
+* GitHub: https://github.com/colearendt/tidyjson
+* Source code: https://github.com/cran/tidyjson
+* Date/Publication: 2023-01-07 00:20:02 UTC
+* Number of recursive dependencies: 93
 
-Run `revdepcheck::cloud_details(, "tidyseurat")` for more info
+Run `revdepcheck::cloud_details(, "tidyjson")` for more info
 
 </details>
 
-## In both
+## Newly broken
 
-*   checking whether package ‘tidyseurat’ can be installed ... ERROR
+*   checking whether package ‘tidyjson’ can be installed ... ERROR
     ```
     Installation failed.
-    See ‘/tmp/workdir/tidyseurat/new/tidyseurat.Rcheck/00install.out’ for details.
+    See ‘/tmp/workdir/tidyjson/new/tidyjson.Rcheck/00install.out’ for details.
+    ```
+
+## Newly fixed
+
+*   checking Rd files ... NOTE
+    ```
+    checkRd: (-1) json_schema.Rd:33: Lost braces; missing escapes or markup?
+        33 |   \item object  -> {"name": <type>} e.g., {"age": 32} -> {"age": "number"}
+           |                    ^
+    checkRd: (-1) json_schema.Rd:33: Lost braces; missing escapes or markup?
+        33 |   \item object  -> {"name": <type>} e.g., {"age": 32} -> {"age": "number"}
+           |                                           ^
+    checkRd: (-1) json_schema.Rd:33: Lost braces; missing escapes or markup?
+        33 |   \item object  -> {"name": <type>} e.g., {"age": 32} -> {"age": "number"}
+           |                                                          ^
     ```
 
 ## Installation
@@ -2258,38 +937,40 @@ Run `revdepcheck::cloud_details(, "tidyseurat")` for more info
 ### Devel
 
 ```
-* installing *source* package ‘tidyseurat’ ...
-** package ‘tidyseurat’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘tidyjson’ ...
+** package ‘tidyjson’ successfully unpacked and MD5 sums checked
 ** using staged installation
 ** R
 ** data
 *** moving datasets to lazyload DB
 ** inst
 ** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
+Error: object ‘at_depth’ is not exported by 'namespace:purrr'
 Execution halted
-ERROR: lazy loading failed for package ‘tidyseurat’
-* removing ‘/tmp/workdir/tidyseurat/new/tidyseurat.Rcheck/tidyseurat’
+ERROR: lazy loading failed for package ‘tidyjson’
+* removing ‘/tmp/workdir/tidyjson/new/tidyjson.Rcheck/tidyjson’
 
 
 ```
 ### CRAN
 
 ```
-* installing *source* package ‘tidyseurat’ ...
-** package ‘tidyseurat’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘tidyjson’ ...
+** package ‘tidyjson’ successfully unpacked and MD5 sums checked
 ** using staged installation
 ** R
 ** data
 *** moving datasets to lazyload DB
 ** inst
 ** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
-Execution halted
-ERROR: lazy loading failed for package ‘tidyseurat’
-* removing ‘/tmp/workdir/tidyseurat/old/tidyseurat.Rcheck/tidyseurat’
+** help
+*** installing help indices
+** building package indices
+** installing vignettes
+** testing if installed package can be loaded from temporary location
+** testing if installed package can be loaded from final location
+** testing if installed package keeps a record of temporary installation path
+* DONE (tidyjson)
 
 
 ```
diff --git a/revdep/problems.md b/revdep/problems.md
index 083f6277f..82466e141 100644
--- a/revdep/problems.md
+++ b/revdep/problems.md
@@ -1,3 +1,92 @@
+# admiral
+
+<details>
+
+* Version: 1.3.1
+* GitHub: https://github.com/pharmaverse/admiral
+* Source code: https://github.com/cran/admiral
+* Date/Publication: 2025-07-29 14:40:02 UTC
+* Number of recursive dependencies: 80
+
+Run `revdepcheck::cloud_details(, "admiral")` for more info
+
+</details>
+
+## Newly broken
+
+*   checking installed package size ... NOTE
+    ```
+      installed size is  5.2Mb
+      sub-directories of 1Mb or more:
+        doc    2.3Mb
+        help   1.8Mb
+    ```
+
+## In both
+
+*   checking data for non-ASCII characters ... NOTE
+    ```
+      Note: found 24 marked UTF-8 strings
+    ```
+
+# CohortCharacteristics
+
+<details>
+
+* Version: 1.0.0
+* GitHub: https://github.com/darwin-eu/CohortCharacteristics
+* Source code: https://github.com/cran/CohortCharacteristics
+* Date/Publication: 2025-05-20 22:30:11 UTC
+* Number of recursive dependencies: 189
+
+Run `revdepcheck::cloud_details(, "CohortCharacteristics")` for more info
+
+</details>
+
+## Newly broken
+
+*   checking re-building of vignette outputs ... ERROR
+    ```
+    Error(s) in re-building vignettes:
+    --- re-building ‘summarise_characteristics.Rmd’ using rmarkdown
+    trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
+    Content type 'application/zip' length 6754786 bytes (6.4 MB)
+    ============
+    downloaded 1.7 MB
+    
+    
+    Quitting from summarise_characteristics.Rmd:11-19 [unnamed-chunk-1]
+    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+    ...
+    
+    Error: processing vignette 'summarise_characteristics.Rmd' failed with diagnostics:
+    download from 'https://example-data.ohdsi.dev/GiBleed.zip' failed
+    --- failed re-building ‘summarise_characteristics.Rmd’
+    
+    --- re-building ‘summarise_cohort_overlap.Rmd’ using rmarkdown
+    trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
+    Content type 'application/zip' length 6754786 bytes (6.4 MB)
+    ==================================================
+    downloaded 6.4 MB
+    ```
+
+## In both
+
+*   checking installed package size ... NOTE
+    ```
+      installed size is  6.1Mb
+      sub-directories of 1Mb or more:
+        doc    4.0Mb
+        help   1.8Mb
+    ```
+
+*   checking DESCRIPTION meta-information ... NOTE
+    ```
+    Packages listed in more than one of Depends, Imports, Suggests, Enhances:
+      ‘reactable’ ‘DT’
+    A package should be listed in only one of these fields.
+    ```
+
 # CPAT
 
 <details>
@@ -108,29 +197,210 @@ ERROR: lazy loading failed for package ‘kerastuneR’
 
 
 ```
-# PopED
+# MeasurementDiagnostics
+
+<details>
+
+* Version: 0.1.0
+* GitHub: NA
+* Source code: https://github.com/cran/MeasurementDiagnostics
+* Date/Publication: 2025-07-29 11:50:02 UTC
+* Number of recursive dependencies: 127
+
+Run `revdepcheck::cloud_details(, "MeasurementDiagnostics")` for more info
+
+</details>
+
+## Newly broken
+
+*   checking re-building of vignette outputs ... ERROR
+    ```
+    Error(s) in re-building vignettes:
+    --- re-building ‘summariseMeasurementUse.Rmd’ using rmarkdown
+    trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
+    Content type 'application/zip' length 6754786 bytes (6.4 MB)
+    ===============
+    downloaded 2.0 MB
+    
+    
+    Quitting from summariseMeasurementUse.Rmd:10-18 [unnamed-chunk-1]
+    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+    ...
+    
+    Error: processing vignette 'summariseMeasurementUse.Rmd' failed with diagnostics:
+    download from 'https://example-data.ohdsi.dev/GiBleed.zip' failed
+    --- failed re-building ‘summariseMeasurementUse.Rmd’
+    
+    SUMMARY: processing the following file failed:
+      ‘summariseMeasurementUse.Rmd’
+    
+    Error: Vignette re-building failed.
+    Execution halted
+    ```
+
+# omock
+
+<details>
+
+* Version: 0.4.0
+* GitHub: https://github.com/ohdsi/omock
+* Source code: https://github.com/cran/omock
+* Date/Publication: 2025-06-12 16:10:02 UTC
+* Number of recursive dependencies: 85
+
+Run `revdepcheck::cloud_details(, "omock")` for more info
+
+</details>
+
+## Newly broken
+
+*   checking examples ... ERROR
+    ```
+    Running examples in ‘omock-Ex.R’ failed
+    The error most likely occurred in:
+    
+    > ### Name: mockCdmFromDataset
+    > ### Title: Create a 'local' cdm_reference from a dataset.
+    > ### Aliases: mockCdmFromDataset
+    > 
+    > ### ** Examples
+    > 
+    > library(omock)
+    ...
+    downloaded 56 KB
+    
+    Warning in utils::download.file(url = url, destfile = datasetFile) :
+      downloaded length 57344 != reported length 6754786
+    Warning in utils::download.file(url = url, destfile = datasetFile) :
+      URL 'https://example-data.ohdsi.dev/GiBleed.zip': Timeout of 60 seconds was reached
+    Error in utils::download.file(url = url, destfile = datasetFile) : 
+      download from 'https://example-data.ohdsi.dev/GiBleed.zip' failed
+    Calls: downloadMockDataset -> <Anonymous>
+    Execution halted
+    ```
+
+## In both
+
+*   checking tests ... ERROR
+    ```
+      Running ‘testthat.R’
+    Running the tests in ‘tests/testthat.R’ failed.
+    Complete output:
+      > # This file is part of the standard setup for testthat.
+      > # It is recommended that you do not modify it.
+      > #
+      > # Where should you do additional test configuration?
+      > # Learn more about the roles of various files in:
+      > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
+      > # * https://testthat.r-lib.org/articles/special-files.html
+    ...
+      i Actually got a <simpleError> with text:
+        object 'cdm' not found
+      ── Failure ('test-mockDatasets.R:35:3'): mock datasets cdm creation ────────────
+      Expected `cdm <- mockCdmFromDataset(datasetName = dbName)` to run without any errors.
+      i Actually got a <rlang_error> with text:
+        At least person and observation_period should be provided in tables
+      
+      [ FAIL 6 | WARN 12 | SKIP 0 | PASS 108 ]
+      Error: Test failures
+      Execution halted
+    ```
+
+# OmopSketch
 
 <details>
 
-* Version: 0.7.0
-* GitHub: https://github.com/andrewhooker/PopED
-* Source code: https://github.com/cran/PopED
-* Date/Publication: 2024-10-07 19:30:02 UTC
-* Number of recursive dependencies: 139
+* Version: 0.5.1
+* GitHub: https://github.com/OHDSI/OmopSketch
+* Source code: https://github.com/cran/OmopSketch
+* Date/Publication: 2025-06-19 19:50:06 UTC
+* Number of recursive dependencies: 175
 
-Run `revdepcheck::cloud_details(, "PopED")` for more info
+Run `revdepcheck::cloud_details(, "OmopSketch")` for more info
 
 </details>
 
 ## Newly broken
 
+*   checking tests ... ERROR
+    ```
+      Running ‘testthat.R’
+    Running the tests in ‘tests/testthat.R’ failed.
+    Complete output:
+      > # This file is part of the standard setup for testthat.
+      > # It is recommended that you do not modify it.
+      > #
+      > # Where should you do additional test configuration?
+      > # Learn more about the roles of various files in:
+      > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
+      > # * https://testthat.r-lib.org/articles/special-files.html
+    ...
+        9.         │   └─base (local) tryCatchList(expr, classes, parentenv, handlers)
+       10.         │     └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
+       11.         │       └─base (local) doTryCatch(return(expr), name, parentenv, handler)
+       12.         └─testthat:::parallel_event_loop_chunky(queue, reporters, ".")
+       13.           └─queue$poll(Inf)
+       14.             └─base::lapply(...)
+       15.               └─testthat (local) FUN(X[[i]], ...)
+       16.                 └─private$handle_error(msg, i)
+       17.                   └─rlang::abort(...)
+      Execution halted
+    ```
+
+*   checking re-building of vignette outputs ... ERROR
+    ```
+    Error(s) in re-building vignettes:
+    --- re-building ‘database_characteristics.Rmd’ using rmarkdown
+    --- finished re-building ‘database_characteristics.Rmd’
+    
+    --- re-building ‘missing_data.Rmd’ using rmarkdown
+    trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
+    Content type 'application/zip' length 6754786 bytes (6.4 MB)
+    ===============
+    downloaded 2.0 MB
+    
+    ...
+     3.     ├─withr::with_options(...)
+     4.     │ └─base::force(code)
+     5.     └─utils::download.file(...)
+    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+    
+    Error: processing vignette 'missing_data.Rmd' failed with diagnostics:
+    download from 'https://example-data.ohdsi.dev/GiBleed.zip' failed
+    --- failed re-building ‘missing_data.Rmd’
+    
+    --- re-building ‘summarise_clinical_tables_records.Rmd’ using rmarkdown
+    ```
+
+## In both
+
 *   checking installed package size ... NOTE
     ```
-      installed size is  5.5Mb
+      installed size is 18.1Mb
       sub-directories of 1Mb or more:
-        R      1.5Mb
-        doc    1.4Mb
-        test   1.1Mb
+        doc  17.1Mb
+    ```
+
+# PatientProfiles
+
+<details>
+
+* Version: 1.4.2
+* GitHub: https://github.com/darwin-eu/PatientProfiles
+* Source code: https://github.com/cran/PatientProfiles
+* Date/Publication: 2025-07-09 13:20:05 UTC
+* Number of recursive dependencies: 138
+
+Run `revdepcheck::cloud_details(, "PatientProfiles")` for more info
+
+</details>
+
+## Newly broken
+
+*   checking re-building of vignette outputs ... ERROR
+    ```
+    Error(s) in re-building vignettes:
+    --- re-building ‘cohort-intersect.Rmd’ using rmarkdown
     ```
 
 # quincunx
@@ -341,3 +611,78 @@ ERROR: lazy loading failed for package ‘tidyjson’
 
 
 ```
+# wbids
+
+<details>
+
+* Version: 1.0.0
+* GitHub: https://github.com/teal-insights/r-wbids
+* Source code: https://github.com/cran/wbids
+* Date/Publication: 2025-02-08 22:50:02 UTC
+* Number of recursive dependencies: 70
+
+Run `revdepcheck::cloud_details(, "wbids")` for more info
+
+</details>
+
+## Newly broken
+
+*   checking examples ... ERROR
+    ```
+    Running examples in ‘wbids-Ex.R’ failed
+    The error most likely occurred in:
+    
+    > ### Name: ids_bulk_files
+    > ### Title: Retrieve Available Bulk Download Files for International Debt
+    > ###   Statistics
+    > ### Aliases: ids_bulk_files
+    > 
+    > ### ** Examples
+    > 
+    ...
+    + ## End(Don't show)
+    + ids_bulk_files()
+    + ## Don't show: 
+    + }) # examplesIf
+    > ids_bulk_files()
+    Warning in readBin(3L, raw(0), 32768L) :
+      URL 'https://datacatalogapi.worldbank.org/ddhxext/DatasetDownload?dataset_unique_id=0038015&version_id=': Timeout of 60 seconds was reached
+    Error in readBin(3L, raw(0), 32768L) : cannot read from connection
+    Calls: <Anonymous> ... parse_and_simplify -> parseJSON -> parse_con -> readBin
+    Execution halted
+    ```
+
+## Newly fixed
+
+*   checking tests ... ERROR
+    ```
+      Running ‘testthat.R’
+    Running the tests in ‘tests/testthat.R’ failed.
+    Complete output:
+      > # This file is part of the standard setup for testthat.
+      > # It is recommended that you do not modify it.
+      > #
+      > # Where should you do additional test configuration?
+      > # Learn more about the roles of various files in:
+      > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
+      > # * https://testthat.r-lib.org/articles/special-files.html
+    ...
+       1. ├─wbids:::read_bulk_info() at test-read_bulk_info.R:2:3
+       2. │ └─jsonlite::fromJSON(...)
+       3. │   └─jsonlite:::parse_and_simplify(...)
+       4. │     └─jsonlite:::parseJSON(txt, bigint_as_char)
+       5. │       └─jsonlite:::parse_con(txt, bigint_as_char)
+       6. └─base::readBin(`<url>`, `<raw>`, 32768L)
+      
+      [ FAIL 1 | WARN 1 | SKIP 7 | PASS 146 ]
+      Error: Test failures
+      Execution halted
+    ```
+
+## In both
+
+*   checking data for non-ASCII characters ... NOTE
+    ```
+      Note: found 78 marked UTF-8 strings
+    ```
+