Merge pull request #853 from AlexsLemonade/auto_render_live

GHA: Automated live (rendered) versions of the notebooks

Author: sjspielman

RNA-seq/02-gastric_cancer_tximeta.nb.html

@@ -3264,8 +3264,8 @@ <h2>Summarize to gene</h2>
 <pre class="r"><code># Summarize to the gene level
 gene_summarized &lt;- summarizeToGene(txi_data)</code></pre>
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-<pre><code>loading existing EnsDb created: 2025-05-22 15:50:15</code></pre>
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+<pre><code>loading existing EnsDb created: 2025-05-22 19:46:42</code></pre>
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 <pre><code>obtaining transcript-to-gene mapping from database</code></pre>

scRNA-seq-advanced/05-aucell-live.Rmd

@@ -44,9 +44,6 @@ We will use an snRNA-seq of a Ewing sarcoma sample from the [`SCPCP000015` proje
 ### Libraries
 
 ```{r setup}
-# set seed for reproducibility
-set.seed(2025)
-
 # We will be loading a SingleCellExperiment object into our environment but don't need to see the startup messages
 suppressPackageStartupMessages({
   library(SingleCellExperiment)