pyproj

Author: yrkim98

napari.yaml

@@ -0,0 +1,20 @@
+name: napari-allencell-segmenter
+display_name: Allen Cell Segmenter
+metadata_version: "2.2"
+
+contributions:
+  commands:
+    - id: napari-allencell-segmenter.workflow_editor
+      title: Workflow editor
+      python_name: napari_allencell_segmenter._plugin:WorkflowEditorWidget
+
+    - id: napari-allencell-segmenter.batch_processing
+      title: Batch processing
+      python_name: napari_allencell_segmenter._plugin:BatchProcessingWidget
+
+  widgets:
+    - command: napari-allencell-segmenter.workflow_editor
+      display_name: Workflow editor
+
+    - command: napari-allencell-segmenter.batch_processing
+      display_name: Batch processing

napari_allencell_segmenter/_dock_widget.py

@@ -96,6 +96,7 @@ def read(fname):
     tests_require=test_requirements,
     extras_require=extra_requirements,
     include_package_data=True,
+    package_data={"napari_allencell_segmenter": ["napari.yaml"]},
     classifiers=[
         "Development Status :: 5 - Production/Stable",
         "Intended Audience :: Science/Research",
@@ -114,7 +115,7 @@ def read(fname):
     ],
     entry_points={
         "napari.manifest": [
-            "napari-allencell-segmenter = napari_allencell_segmenter:napari.yaml"
+            "napari-allencell-segmenter = napari_allencell_segmenter/napari.yaml"
         ],
     },
     project_urls={

napari_allencell_segmenter/napari.yaml

@@ -1,2 +1,109 @@
 [tool.black]
 line-length = 120
+
+[build-system]
+requires = ["setuptools>=61", "setuptools_scm>=7"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "napari-allencell-segmenter"
+version = "2.1.12-dev0"  # setuptools_scm will override if tags exist
+description = "A plugin that enables 3D image segmentation provided by Allen Institute for Cell Science"
+readme = "README.md"
+license = { text = "BSD-3" }
+requires-python = ">=3.9"
+authors = [
+  { name = "Allen Institute for Cell Science" }
+]
+classifiers = [
+  "Development Status :: 5 - Production/Stable",
+  "Intended Audience :: Science/Research",
+  "Framework :: napari",
+  "Topic :: Scientific/Engineering",
+  "Topic :: Scientific/Engineering :: Visualization",
+  "Topic :: Scientific/Engineering :: Information Analysis",
+  "Topic :: Scientific/Engineering :: Bio-Informatics",
+  "Programming Language :: Python :: 3",
+  "Programming Language :: Python :: 3.9",
+  "Operating System :: OS Independent",
+  "License :: OSI Approved :: BSD License",
+]
+
+dependencies = [
+  "napari>=0.4.9",
+  "npe2",
+  "numpy",
+  "aicssegmentation >= 0.5.3",
+  "magicgui >= 0.2.9",
+  "aicsimageio ~= 4.0.5",
+  "opencv-python-headless>=4.5.1",
+  "importlib-metadata==4.11.4",
+]
+
+[project.optional-dependencies]
+test = [
+  "black>=19.10b0",
+  "codecov>=2.0.22",
+  "docutils>=0.10,<0.16",
+  "flake8>=3.7.7",
+  "psutil>=5.7.0",
+  "pytest>=4.3.0",
+  "pytest-cov==2.6.1",
+  "pytest-raises>=0.10",
+  "pytest-qt>=3.3.0",
+  "quilt3>=3.1.12",
+]
+dev = [
+  "bumpversion>=0.5.3",
+  "coverage>=5.0a4",
+  "gitchangelog>=3.0.4",
+  "ipython>=7.5.0",
+  "m2r>=0.2.1",
+  "pytest-runner>=4.4",
+  "Sphinx>=2.0.0b1,<3",
+  "sphinx_rtd_theme>=0.1.2",
+  "tox==3.25.0",
+  "twine>=1.13.0",
+  "wheel>=0.33.1",
+]
+setup = ["pytest-runner"]
+all = [
+  "napari>=0.4.9",
+  "npe2",
+  "numpy",
+  "aicssegmentation >= 0.5.3",
+  "magicgui >= 0.2.9",
+  "aicsimageio ~= 4.0.5",
+  "opencv-python-headless>=4.5.1",
+  "importlib-metadata==4.11.4",
+  "black>=19.10b0",
+  "codecov>=2.0.22",
+  "docutils>=0.10,<0.16",
+  "flake8>=3.7.7",
+  "psutil>=5.7.0",
+  "pytest>=4.3.0",
+  "pytest-cov==2.6.1",
+  "pytest-raises>=0.10",
+  "pytest-qt>=3.3.0",
+  "quilt3>=3.1.12",
+  "bumpversion>=0.5.3",
+  "coverage>=5.0a4",
+  "gitchangelog>=3.0.4",
+  "ipython>=7.5.0",
+  "m2r>=0.2.1",
+  "pytest-runner>=4.4",
+  "Sphinx>=2.0.0b1,<3",
+  "sphinx_rtd_theme>=0.1.2",
+  "tox==3.25.0",
+  "twine>=1.13.0",
+  "wheel>=0.33.1",
+]
+
+[project.entry-points."napari.manifest"]
+"napari-allencell-segmenter" = "napari_allencell_segmenter:napari.yaml"
+
+[tool.setuptools_scm]
+write_to = "napari_allencell_segmenter/_version.py"
+
+[tool.setuptools.packages.find]
+include = ["napari_allencell_segmenter*"]