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Updates for compatibility with Huber-group-EMBL/romeo #43
r-universe.yml
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R-universe testing
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Source pkg and vignettes
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R-universe testing
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Build rOpenSci docs
R-universe testing
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Bioconductor Checks
3m 45s
Matrix: R-universe testing / linux
Matrix: R-universe testing / macos
Matrix: R-universe testing / wasm
Matrix: R-universe testing / windows
Annotations
2 errors and 5 warnings
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R-universe testing / R-devel for Windows:
ImageArray#L0
Check: examples, Result: ERROR
Running examples in 'ImageArray-Ex.R' failed
The error most likely occurred in:
> ### Name: ImageArray-methods
> ### Title: Methods for ImageArray
> ### Aliases: ImageArray-methods [[,ImageArray,numeric-method
> ### [[<-,ImageArray,numeric-method crop crop,ImageArray-method negate
> ### negate,ImageArray-method modulate modulate,ImageArray-method meta
> ### meta,ImageArray-method axes axes,ImageArray-method axes<-
> ### axes<-,ImageArray-method scales scales,ImageArray-method realize
> ### realize,ImageArray-method as.raster as.raster,ImageArray-method path
> ### path,ImageArray-method extent extent,ImageArray-method
> ### [,ImageArray,ANY,ANY,ANY-method dim,ImageArray-method
> ### type,ImageArray-method length,ImageArray-method as.raster.ImageArray
> ### aperm,ImageArray-method path<-,ImageArray-method
>
> ### ** Examples
>
> # get image
> library(EBImage)
> img.file <- system.file("images", "sample.png", package="EBImage")
>
> # create ImageArray
> imgarray <- ImageArray(img.file, n.levels = 3)
Error in validObject(.Object) : invalid class "DelayedMatrix" object:
the supplied seed must support extract_array()
Calls: ImageArray ... new2 -> new -> initialize -> initialize -> validObject
Execution halted
Check: tests, Result: ERROR
Running 'testthat.R' [150s]
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
3. └─ImageArray:::createImageList(...)
4. └─ImageArray (local) .local(image, ...)
5. ├─DelayedArray::DelayedArray(cur_img)
6. └─DelayedArray::DelayedArray(cur_img)
7. └─DelayedArray::new_DelayedArray(seed)
8. └─S4Vectors::new2(Class, seed = seed)
9. └─methods::new(...)
10. ├─methods::initialize(value, ...)
11. └─methods::initialize(value, ...)
12. └─methods::validObject(.Object)
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 655 ]
Error:
! Test failures.
Execution halted
|
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R-universe testing / R-devel for Linux:
ImageArray#L0
Check: examples, Result: ERROR
Running examples in ‘ImageArray-Ex.R’ failed
The error most likely occurred in:
> ### Name: ImageArray-methods
> ### Title: Methods for ImageArray
> ### Aliases: ImageArray-methods [[,ImageArray,numeric-method
> ### [[<-,ImageArray,numeric-method crop crop,ImageArray-method negate
> ### negate,ImageArray-method modulate modulate,ImageArray-method meta
> ### meta,ImageArray-method axes axes,ImageArray-method axes<-
> ### axes<-,ImageArray-method scales scales,ImageArray-method realize
> ### realize,ImageArray-method as.raster as.raster,ImageArray-method path
> ### path,ImageArray-method extent extent,ImageArray-method
> ### [,ImageArray,ANY,ANY,ANY-method dim,ImageArray-method
> ### type,ImageArray-method length,ImageArray-method as.raster.ImageArray
> ### aperm,ImageArray-method path<-,ImageArray-method
>
> ### ** Examples
>
> # get image
> library(EBImage)
> img.file <- system.file("images", "sample.png", package="EBImage")
>
> # create ImageArray
> imgarray <- ImageArray(img.file, n.levels = 3)
Error in validObject(.Object) : invalid class “DelayedMatrix” object:
the supplied seed must support extract_array()
Calls: ImageArray ... new2 -> new -> initialize -> initialize -> validObject
Execution halted
Check: tests, Result: ERROR
Running ‘testthat.R’ [122s/113s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
3. └─ImageArray:::createImageList(...)
4. └─ImageArray (local) .local(image, ...)
5. ├─DelayedArray::DelayedArray(cur_img)
6. └─DelayedArray::DelayedArray(cur_img)
7. └─DelayedArray::new_DelayedArray(seed)
8. └─S4Vectors::new2(Class, seed = seed)
9. └─methods::new(...)
10. ├─methods::initialize(value, ...)
11. └─methods::initialize(value, ...)
12. └─methods::validObject(.Object)
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 655 ]
Error:
! Test failures.
Execution halted
|
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R-universe testing / R-oldrel for MacOS:
ImageArray#L0
Check: Rd metadata, Result: WARNING
Rd files with duplicated alias 'createImageArray':
‘ImageArray-class.Rd’ ‘ImageArray.Rd’
Check: for code/documentation mismatches, Result: WARNING
S4 class codoc mismatches from Rd file 'ImageArray-class.Rd':
Slots for class 'ImageArray'
Code: levels scales
Docs: axes levels scales
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R-universe testing / R-release for MacOS:
ImageArray#L0
Check: Rd metadata, Result: WARNING
Rd files with duplicated alias 'createImageArray':
‘ImageArray-class.Rd’ ‘ImageArray.Rd’
Check: for code/documentation mismatches, Result: WARNING
S4 class codoc mismatches from Rd file 'ImageArray-class.Rd':
Slots for class 'ImageArray'
Code: levels scales
Docs: axes levels scales
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|
R-universe testing / R-oldrel for Windows:
ImageArray#L0
Check: Rd metadata, Result: WARNING
Rd files with duplicated alias 'createImageArray':
'ImageArray-class.Rd' 'ImageArray.Rd'
Check: for code/documentation mismatches, Result: WARNING
S4 class codoc mismatches from Rd file 'ImageArray-class.Rd':
Slots for class 'ImageArray'
Code: levels scales
Docs: axes levels scales
|
|
R-universe testing / R-release for Windows:
ImageArray#L0
Check: Rd metadata, Result: WARNING
Rd files with duplicated alias 'createImageArray':
'ImageArray-class.Rd' 'ImageArray.Rd'
Check: for code/documentation mismatches, Result: WARNING
S4 class codoc mismatches from Rd file 'ImageArray-class.Rd':
Slots for class 'ImageArray'
Code: levels scales
Docs: axes levels scales
|
|
R-universe testing / R-release for Linux:
ImageArray#L0
Check: Rd metadata, Result: WARNING
Rd files with duplicated alias 'createImageArray':
‘ImageArray-class.Rd’ ‘ImageArray.Rd’
Check: for code/documentation mismatches, Result: WARNING
S4 class codoc mismatches from Rd file 'ImageArray-class.Rd':
Slots for class 'ImageArray'
Code: levels scales
Docs: axes levels scales
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