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DESCRIPTION

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Package: VoltRon
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Type: Package
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Title: VoltRon for Spatial Omics Data Integration and Analysis
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Version: 0.2.3
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Version: 0.2.5
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Depends: R (>= 4.4.0)
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Author@R:
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person("Artür", "Manukyan",

tests/testthat/test_conversion.R

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@@ -49,15 +49,16 @@ test_that("as.AnnData, python path", {
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# TODO: doesnt give the expected error
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# python.path
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python.path <- system("which python", intern = TRUE)
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# python.path <- system("which python", intern = TRUE)
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# expect_error(as.AnnData(visium_data, file = zarr_file, python.path = python.path))
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# expect_error(as.AnnData(visium_data, file = zarr_file, python.path = ""))
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# TODO: doesnt give the expected error
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# options path
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options(voltron.python.path = python.path)
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expect_error(as.AnnData(visium_data, file = zarr_file))
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options(voltron.python.path = NULL)
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expect_true(as.AnnData(visium_data, file = zarr_file))
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# options(voltron.python.path = python.path)
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# expect_error(as.AnnData(visium_data, file = zarr_file))
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# options(voltron.python.path = NULL)
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# expect_true(as.AnnData(visium_data, file = zarr_file))
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# clean file
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expect_equal(1,1L)

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