Skip to content

Commit 5c04593

Browse files
authored
Merge pull request #18 from CCPBioSim/jimboid-patch-1
Update README with workshop and usage information
2 parents d676a17 + 237c5b2 commit 5c04593

File tree

1 file changed

+32
-0
lines changed

1 file changed

+32
-0
lines changed

README.md

Lines changed: 32 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -1,3 +1,12 @@
1+
# CCPBioSim Protein Analysis Workshop
2+
3+
[![ci](https://github.com/ccpbiosim/protein-analysis-workshop/actions/workflows/build.yaml/badge.svg?branch=main)](https://github.com/ccpbiosim/protein-analysis-workshop/actions/workflows/build.yaml)
4+
[![latest](https://img.shields.io/badge/dynamic/json?url=https%3A%2F%2Fccpbiosim.github.io%2Fworkshop.json&query=%24.containers.protein-analysis-workshop.latest&labelColor=grey&logo=github&logoColor=white&label=latest&color=purple)](https://github.com/ccpbiosim/protein-analysis-workshop/pkgs/container/protein-analysis-workshop)
5+
[![issues](https://img.shields.io/github/issues/ccpbiosim/protein-analysis-workshop?logo=github&labelColor=grey)](https://github.com/CCPBioSim/protein-analysis-workshop/issues)
6+
[![pr](https://img.shields.io/github/issues-pr/ccpbiosim/protein-analysis-workshop?logo=github&labelColor=grey)](https://github.com/CCPBioSim/protein-analysis-workshop/pulls)
7+
8+
This workshop source repository contains the build recipe for a docker container derived from the CCPBioSim JupyterHub image. This container adds the necessary software packages and notebook content to form a deployable course container.
9+
110
This workshop introduces the application of MDTraj to the analysis of protein simulation data
211

312
It is in two parts:
@@ -7,3 +16,26 @@ An introduction to the use of MDTraj for the analysis of simulations. The data c
716

817
2. EQUILIBRATION
918
An introduction to a key issue in MD simulation: testing for equilibration, sampling, and convergence. The data here comes from a long simulation of a different protein, chignolin.
19+
20+
## How to Use
21+
22+
This training course is deployed on the [CCPBioSim](www.ccpbiosim.ac.uk) website via our cloud infrastructure, however you can deploy on your own machine with docker.
23+
24+
Pull the container from our repository::
25+
26+
docker pull ghcr.io/ccpbiosim/protein-analysis-workshop:latest
27+
28+
In our containers we are using the JupyterHub default port 8888, so you should
29+
forward this port when deploying locally::
30+
31+
docker run -p 8888:8888 ghcr.io/ccpbiosim/protein-analysis-workshop:latest
32+
33+
## Authors
34+
35+
Workshop Content Authors:
36+
37+
- Charlie Laughton
38+
39+
## Contact
40+
41+
Please direct all questions and feedback to [Charlie Laughton](mailto:charles.laughton@nottingham.ac.uk)

0 commit comments

Comments
 (0)