Use "container-user" in path if no username exists; release v1.3.3

Author: sammysheep

.github/workflows/release.yml

@@ -48,12 +48,12 @@ jobs:
         id: create_release
         shell: bash
         run: |
-          [[ "${{ github.ref_name }}" == "test" ]] && latest="--latest=false" || latest=
+          [[ "${{ github.ref_name }}" == "test" ]] && test_opts="--latest=false --draft" || test_opts=
 
           gh release create "${{ github.ref_name }}" "${{ steps.create_archive.outputs.archive_name }}" \
           --title "IRMA ${{ github.ref_name }}" \
           --notes-file "$RUNNER_TEMP/release_notes.md" \
-          $latest
+          $test_opts
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
 

CHANGELOG.md

@@ -1,10 +1,11 @@
 # IRMA Changelog
 
-## [1.3.3]: 2026-05-13
+## [1.3.3]: 2026-05-14
 
 ### Fixes
 
 - Regression fixed for zero alternative match data affecting post-processing
+- Fix working directory path error for when image user isn't found
 
 ## [1.3.2]: 2026-03-27
 

IRMA

@@ -3,8 +3,8 @@ PROGRAM="Iterative Refinement Meta-Assembler (IRMA)"
 AUTHOR="Samuel S. Shepard"
 EMAIL="sshepard@cdc.gov"
 AFFIL="CDC/DDID/NCIRD/ID"
-DATE="27 Apr 2026"
-VERSION="1.3.2"
+DATE="14 MAY 2026"
+VERSION="1.3.3"
 LICENSE="Licensed under Apache 2 with a Public Domain copyright. This program comes with ABSOLUTELY NO WARRANTY. See notices in <README.md>.
 Distributed, third-party components have non-commercial restrictions! See: <IRMA_RES/third_party/MANIFEST.md>"
 
@@ -348,17 +348,18 @@ if [[ "$MAX_ROUNDS" -eq "1" && "$ASSEM_REF" -eq "1" ]]; then
     ALIGN_PROGS[0]="NONE"
 fi
 
+WHOAMI_DIR=$(whoami 2> /dev/null || echo "container-user")
 # define ppath
 TOKEN=$(perl -e '@chars = ("A".."Z","0".."9","a".."z");print $chars[int(rand(scalar(@chars)))] for 1..32;')
 if [[ "$ALLOW_TMP" -eq "1" && "${GRID_ON:-0}" -eq "0" ]]; then
     if [ -z "$TMP" ]; then
         abort "ALLOW_TMP=1 but TMP var was unspecified!"
     else
-        ppath="$TMP"/$(whoami)/IRMAv$VERSION/${RUN}-${TOKEN}
+        ppath="$TMP"/$WHOAMI_DIR/IRMAv$VERSION/${RUN}-${TOKEN}
     fi
 else
     if [[ "${GRID_PATH:-0}" != "0" && "${GRID_ON:-0}" -eq "1" ]]; then
-        ppath="$GRID_PATH"/$(whoami)/IRMAv$VERSION/${RUN}-${TOKEN}
+        ppath="$GRID_PATH"/$WHOAMI_DIR/IRMAv$VERSION/${RUN}-${TOKEN}
     else
         ppath="$rpath"/ppath/${RUN}-${TOKEN}
     fi