update python #1

	name: Build and Test

	on:
	push:

	permissions:
	contents: read # to fetch code (actions/checkout)

	jobs:
	build_wheels:
	name: ${{ matrix.os }} Wheels
	runs-on: ${{ matrix.os }}
	strategy:
	# Ensure that a wheel builder finishes even if another fails
	fail-fast: false
	matrix:
	os: [windows-latest, macos-latest]
	python-version: ['3.8', '3.9', '3.10', '3.11', '3.12']

	steps:
	- name: Checkout ${{ github.repository }}
	uses: actions/checkout@v3
	with:
	fetch-depth: 0

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v2
	with:
	python-version: ${{ matrix.python-version }}

	- name: Dependencies
	run: pip install .

	- name: Test
	run: \|
	python -c "\
	import anndata
	from sketchKH import *
	adata = anndata.read_h5ad('data/nk_cell_preprocessed.h5ad')
	kh_indices, adata_subsample = sketch(adata, sample_set_key = 'FCS_File', gamma = 1, num_subsamples = 500, frequency_seed = 0, n_jobs = 4)
	"

Navigation Menu