Refactor CI workflow for improved caching and dependency installation (#19)

* Refactor CI workflow to restore global UV cache and streamline dependency installation

* Remove myst-parser from documentation dependencies in uv.lock

* Add caching for UV dependencies in CI workflow

* Use 'uv' command to run tests in CI workflow

Author: emmanuelmathot

.github/workflows/ci.yml

@@ -26,19 +26,31 @@ jobs:
     steps:
     - uses: actions/checkout@v4
 
-    - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v4
+    - name: Restore global uv cache
+      id: cache-restore
+      uses: actions/cache/restore@v4
+      with:
+        path: |
+          ~/.cache/uv
+          ~/.local/share/uv
+          .venv
+        key: uv-main-${{ hashFiles('uv.lock') }}
+        restore-keys: |
+          uv-main-
+
+    - name: Install uv
+      uses: astral-sh/setup-uv@v6
       with:
-        python-version: ${{ matrix.python-version }}
+        version: "0.8.4"
+        python-version: "3.13"
+        enable-cache: false
 
     - name: Install dependencies
-      run: |
-        python -m pip install --upgrade pip
-        pip install -e ".[dev,test]"
+      run: uv sync --group dev --group test
 
     - name: Run tests
       run: |
-        python -m pytest eopf_geozarr/tests/ -v --tb=short -m "not network" --cov=eopf_geozarr --cov-report=xml --cov-report=term-missing
+        uv run pytest eopf_geozarr/tests/ -v --tb=short -m "not network" --cov=eopf_geozarr --cov-report=xml --cov-report=term-missing
 
     - name: Upload coverage to Codecov
       if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.11'
@@ -48,6 +60,16 @@ jobs:
         flags: unittests
         name: codecov-umbrella
 
+    - name: Save uv caches
+      if: steps.cache-restore.outputs.cache-hit != 'true'
+      uses: actions/cache/save@v4
+      with:
+        path: |
+          ~/.cache/uv
+          ~/.local/share/uv
+          .venv
+        key: uv-main-${{ hashFiles('uv.lock') }}
+
   test-network:
     runs-on: ubuntu-latest
     if: github.event_name == 'push' && github.ref == 'refs/heads/main'
@@ -68,32 +90,6 @@ jobs:
       run: |
         python -m pytest eopf_geozarr/tests/ -v --tb=short -m "network"
 
-  docs:
-    runs-on: ubuntu-latest
-    steps:
-    - uses: actions/checkout@v4
-
-    - name: Set up Python
-      uses: actions/setup-python@v4
-      with:
-        python-version: '3.11'
-
-    - name: Install dependencies
-      run: |
-        python -m pip install --upgrade pip
-        pip install -e ".[docs]"
-
-    - name: Build documentation
-      run: |
-        cd docs
-        make html
-
-    - name: Upload docs artifact
-      uses: actions/upload-artifact@v4
-      with:
-        name: documentation
-        path: docs/_build/html/
-
   security:
     runs-on: ubuntu-latest
     steps: