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# Base R Shiny image
FROM rocker/r-base:4.4.0
ARG GITHUB_PAT
ENV GITHUB_PAT=${GITHUB_PAT}
RUN apt-get update \
&& apt-get install -y --no-install-recommends \
libproj-dev \
libudunits2-dev \
libgdal-dev \
libgeos-dev \
libarchive-dev \
libfontconfig1-dev \
libmagick++-dev \
libfreetype6-dev
RUN apt-get install -y --no-install-recommends \
r-cran-devtools \
r-cran-tidyverse
RUN apt-get install -y --no-install-recommends \
r-cran-bibtex \
r-cran-data.table \
r-cran-here \
r-cran-ragg \
r-cran-randomforest \
r-cran-raster \
r-cran-rmarkdown \
r-cran-magick \
r-cran-plotrix \
r-cran-sf \
r-cran-stars \
r-cran-terra
RUN apt-get install -y --no-install-recommends \
r-cran-rcpparmadillo \
r-cran-viridis \
r-cran-bookdown
# RUN install2.r remotes
# RUN Rscript -e 'remotes::install_version("devtools", upgrade = "never", repos = "https://packagemanager.posit.co/cran/__linux__/jammy/latest")'
# RUN Rscript -e 'remotes::install_version("tidyverse", upgrade = "never", repos = "https://packagemanager.posit.co/cran/__linux__/jammy/latest")'
# RUN Rscript -e 'remotes::install_version("bibtex", upgrade = "never", repos = "https://packagemanager.posit.co/cran/__linux__/jammy/latest")'
# RUN Rscript -e 'remotes::install_version("data", upgrade = "never", repos = "https://packagemanager.posit.co/cran/__linux__/jammy/latest")'
# RUN Rscript -e 'remotes::install_version("here", upgrade = "never", repos = "https://packagemanager.posit.co/cran/__linux__/jammy/latest")'
# RUN Rscript -e 'remotes::install_version("ragg", upgrade = "never", repos = "https://packagemanager.posit.co/cran/__linux__/jammy/latest")'
# RUN Rscript -e 'remotes::install_version("randomforest", upgrade = "never", repos = "https://packagemanager.posit.co/cran/__linux__/jammy/latest")'
# RUN Rscript -e 'remotes::install_version("raster", upgrade = "never", repos = "https://packagemanager.posit.co/cran/__linux__/jammy/latest")'
# RUN Rscript -e 'remotes::install_version("rmarkdown", upgrade = "never", repos = "https://packagemanager.posit.co/cran/__linux__/jammy/latest")'
# RUN Rscript -e 'remotes::install_version("magick", upgrade = "never", repos = "https://packagemanager.posit.co/cran/__linux__/jammy/latest")'
# RUN Rscript -e 'remotes::install_version("plotrix", upgrade = "never", repos = "https://packagemanager.posit.co/cran/__linux__/jammy/latest")'
# RUN Rscript -e 'remotes::install_version("sf", upgrade = "never", repos = "https://packagemanager.posit.co/cran/__linux__/jammy/latest")'
# RUN Rscript -e 'remotes::install_version("stars", upgrade = "never", repos = "https://packagemanager.posit.co/cran/__linux__/jammy/latest")'
# RUN Rscript -e 'remotes::install_version("terra", upgrade = "never", repos = "https://packagemanager.posit.co/cran/__linux__/jammy/latest")'
RUN Rscript -e 'remotes::install_version("archive", upgrade = "never", version = "1.1.10", repos = "https://packagemanager.posit.co/cran/__linux__/jammy/latest")'
RUN Rscript -e 'remotes::install_version("RefManageR", upgrade = "never", version = "1.4.0", repos = "https://packagemanager.posit.co/cran/__linux__/jammy/latest")'
RUN Rscript -e 'remotes::install_version("colorspace", upgrade = "never", version = "2.1-1", repos = "https://packagemanager.posit.co/cran/__linux__/jammy/latest")'
RUN Rscript -e 'remotes::install_version("globe", upgrade = "never", version = "1.2-0", repos = "https://packagemanager.posit.co/cran/__linux__/jammy/latest")'
RUN Rscript -e 'remotes::install_version("latex2exp", upgrade = "never", version = "0.9.6", repos = "https://packagemanager.posit.co/cran/__linux__/jammy/latest")'
WORKDIR /usr
COPY . ./
RUN Rscript -e 'remotes::install_github("VLucet/rgovcan", upgrade = "never")'
RUN Rscript -e 'remotes::install_deps(upgrade = "never")'
ENTRYPOINT ["bash"]