diff --git a/modules/EnsEMBL/Web/ImageConfigExtension/Tracks.pm b/modules/EnsEMBL/Web/ImageConfigExtension/Tracks.pm
index 4d78e3b8e5..2582a1c709 100644
--- a/modules/EnsEMBL/Web/ImageConfigExtension/Tracks.pm
+++ b/modules/EnsEMBL/Web/ImageConfigExtension/Tracks.pm
@@ -946,7 +946,7 @@ sub add_synteny {
species => $species_2,
species_hr => $species_readable,
caption => $caption,
- description => qq{Synteny regions between $self_label and $label},
+ description => qq{Synteny regions between $self_label and $label},
colours => $colours,
display => 'off',
renderers => [qw(off Off normal On)],
@@ -970,12 +970,12 @@ sub add_alignments {
my ($static, $wga_page);
my $division = $species_defs->EG_DIVISION;
if ($division) {
- $wga_page = $static = 'whole_genome_alignment.html';
+ $static = 'whole_genome_alignment.html';
}
else {
$static = 'analyses.html';
- $wga_page = $static.'#conservation';
}
+ $wga_page = 'multiple_genome_alignments.html';
foreach my $row (values %{$hashref->{'ALIGNMENTS'}}) {
next unless $row->{'species'}{$prod_name};
@@ -1007,7 +1007,7 @@ sub add_alignments {
$description = 'Pairwise alignments';
}
- $description = qq{$description between $self_label and $other_label};
+ $description = qq{$description between $self_label and $other_label};
$description .= " $1" if $row->{'name'} =~ /\((on.+)\)/;
$alignments->{$menu_key}{$row->{'id'}} = {
@@ -1043,13 +1043,12 @@ sub add_alignments {
if ($row->{'conservation_score'}) {
my ($program) = $hashref->{'CONSERVATION_SCORES'}{$row->{'conservation_score'}}{'type'} =~ /(.+)_CONSERVATION_SCORE/;
- $options{'description'} = sprintf '%s conservation scores based on the %s', $wga_page, $program, $row->{'name'};
-
$alignments->{'conservation'}{"$row->{'id'}_scores"} = {
%options,
conservation_score => $row->{'conservation_score'},
name => "Conservation score for $row->{'name'}",
caption => "$n_species way $program scores",
+ description => sprintf('%s conservation scores based on the %s', $program, $row->{'name'}),
order => sprintf('%12d::%s::%s', 1e12-$n_species*10, $row->{'type'}, $row->{'name'}),
display => 'off',
renderers => [ 'off', 'Off', 'tiling', 'Tiling array' ],
@@ -1060,6 +1059,7 @@ sub add_alignments {
constrained_element => $row->{'constrained_element'},
name => "Constrained elements for $row->{'name'}",
caption => "$n_species way $program elements",
+ description => sprintf('%s constrained elements based on the %s', $program, $row->{'name'}),
order => sprintf('%12d::%s::%s', 1e12-$n_species*10+1, $row->{'type'}, $row->{'name'}),
display => 'off',
renderers => [ 'off', 'Off', 'compact', 'On' ],