Skip to content

Commit d49e824

Browse files
turbomampbuttigieg
turbomam
and
pbuttigieg
authored
NMDC Sediment value set classes and assignments (#1618)
* NMDC Sediment value sets classes plus repair/enhancement to NMDC PlantAssociated value sets * assingment of EnvO classes to NMDC Sediemtn value sets --------- Co-authored-by: Pier Luigi Buttigieg <p.buttigieg@gmail.com>
1 parent f5f58ae commit d49e824

3 files changed

Lines changed: 715 additions & 268 deletions

File tree

‎src/envo/envo-edit.owl‎

Lines changed: 37 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -4496,9 +4496,13 @@ Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/ENVO_03605016>))
44964496
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/ENVO_03605017>))
44974497
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/ENVO_03605018>))
44984498
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/ENVO_03605019>))
4499+
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/ENVO_03605020>))
4500+
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/ENVO_03605021>))
44994501
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/ENVO_03605022>))
45004502
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/ENVO_03605023>))
45014503
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/ENVO_03605024>))
4504+
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/ENVO_03605025>))
4505+
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/ENVO_03605026>))
45024506
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000115>))
45034507
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000116>))
45044508
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000232>))
@@ -4622,7 +4626,9 @@ SubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/ENVO_03605015> <http://p
46224626

46234627
# Annotation Property: <http://purl.obolibrary.org/obo/ENVO_03605016> (NMDC PlantAssociated value sets)
46244628

4629+
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/ENVO_03605016> "Subset of NMDC environmental context value sets for annotating EnvO classes suitable for MIxS environmental context fields related to plant-associated samples. Recommended for use in metadata preparation for repositories like NCBI BioSample.")
46254630
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03605016> "NMDC PlantAssociated value sets"@en)
4631+
AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605016> <https://genomicsstandardsconsortium.github.io/mixs/0016010/>)
46264632
SubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/ENVO_03605016> <http://purl.obolibrary.org/obo/ENVO_03605010>)
46274633

46284634
# Annotation Property: <http://purl.obolibrary.org/obo/ENVO_03605017> (NMDC Water broad scale value set)
@@ -4652,6 +4658,21 @@ AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605019>
46524658
AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605019> <https://microbiomedata.github.io/submission-schema/EnvMediumWaterEnum/>)
46534659
SubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/ENVO_03605019> <http://purl.obolibrary.org/obo/ENVO_03605012>)
46544660

4661+
# Annotation Property: <http://purl.obolibrary.org/obo/ENVO_03605020> (NMDC Sediment value sets)
4662+
4663+
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/ENVO_03605020> "Subset of NMDC environmental context value sets for annotating EnvO classes suitable for MIxS environmental context fields related to sediment samples. Recommended for use in metadata preparation for repositories like NCBI BioSample.")
4664+
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03605020> "NMDC Sediment value sets"@en)
4665+
AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605020> <https://genomicsstandardsconsortium.github.io/mixs/0016011/>)
4666+
SubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/ENVO_03605020> <http://purl.obolibrary.org/obo/ENVO_03605010>)
4667+
4668+
# Annotation Property: <http://purl.obolibrary.org/obo/ENVO_03605021> (NMDC Sediment broad scale value set)
4669+
4670+
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03605021> "NMDC Sediment broad scale value set")
4671+
AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605021> <https://genomicsstandardsconsortium.github.io/mixs/0000012/>)
4672+
AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605021> <https://genomicsstandardsconsortium.github.io/mixs/0016010/>)
4673+
AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605021> <https://microbiomedata.github.io/submission-schema/EnvBroadScaleSedimentEnum/>)
4674+
SubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/ENVO_03605021> <http://purl.obolibrary.org/obo/ENVO_03605020>)
4675+
46554676
# Annotation Property: <http://purl.obolibrary.org/obo/ENVO_03605022> (NMDC PlantAssociated broad scale value set)
46564677

46574678
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/ENVO_03605022> "Used to annotate EnvO classes appropriate for the MIxS env_broad_scale field in plant associated sample records. Supports consistent metadata annotation for systems like NCBI BioSample.")
@@ -4679,6 +4700,22 @@ AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605024>
46794700
AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605024> <https://microbiomedata.github.io/submission-schema/EnvMediumPlantAssociatedEnum/>)
46804701
SubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/ENVO_03605024> <http://purl.obolibrary.org/obo/ENVO_03605016>)
46814702

4703+
# Annotation Property: <http://purl.obolibrary.org/obo/ENVO_03605025> (NMDC Sediment local scale value set)
4704+
4705+
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03605025> "NMDC Sediment local scale value set"@en)
4706+
AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605025> <https://genomicsstandardsconsortium.github.io/mixs/0000013/>)
4707+
AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605025> <https://genomicsstandardsconsortium.github.io/mixs/0016010/>)
4708+
AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605025> <https://microbiomedata.github.io/submission-schema/EnvLocalScaleSedimentEnum/>)
4709+
SubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/ENVO_03605025> <http://purl.obolibrary.org/obo/ENVO_03605020>)
4710+
4711+
# Annotation Property: <http://purl.obolibrary.org/obo/ENVO_03605026> (NMDC Sediment environmental medium value set)
4712+
4713+
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03605026> "NMDC Sediment environmental medium value set"@en)
4714+
AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605026> <https://genomicsstandardsconsortium.github.io/mixs/0000014/>)
4715+
AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605026> <https://genomicsstandardsconsortium.github.io/mixs/0016010/>)
4716+
AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605026> <https://microbiomedata.github.io/submission-schema/EnvMediumSedimentEnum/>)
4717+
SubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/ENVO_03605026> <http://purl.obolibrary.org/obo/ENVO_03605020>)
4718+
46824719
# Annotation Property: <http://purl.obolibrary.org/obo/IAO_0000112> (example of usage)
46834720

46844721
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IAO_0000112> "example of usage")

0 commit comments

Comments
 (0)