Still need to remove redundant sequences after gtf files recombination?

[Flyase]

Hi,
I used TSEBRA and successfully obtained the combined tsebra.gtf integrates the short-read, protein and long-read gtf files generated by braker, do I need another redundant sequence filtration with tools like cd-hit?

Thanks a lot!!

[LarsGab]

Hi,

there shouldn't be any redundant transcripts in the gtf file, but there may be more than one transcript isoform reported per gene.

Best,
Lars