W-ASAP Dashboard next steps

[fhennig]

This is a bug fix that we need to get merged and deployed: GenSpectrum/dashboard-components#987 - because of it we get some 500 errors

I'm collecting some things in here.

• for two-step load processes (i.e. load mutations to display first, then fetch data): improve loading screen feat(website): add Loading component with spinner to the W-ASAP dashboard #800
• have a look at the annotation descriptions, is it fine? We still need a fetch date there.
• fetchMutations - add proper typing (zod) for the JSON response (and better error handling possibly)
• maybe move 'Sequence Type' selector out of the analysis mode specific settings. All modes use this filter except the resistance mutations view.
• Improve WasapFilter type: Not all settings can be set at the same time, so it makes sense to create a union type instead.

Testing

• Add unit test for WasapPageStateHandler
• Add unit test for page state selector: "It could be difficult, but if you would manage to write a unit test for this (in a later PR), that would be quite a step forward ;) We don't really have any of that sort yet, but it would definitely be good. The biggest obstacle might be rendering web components in tests that run on Node." - Fabian

[gordonkoehn]

Let me summarise some takeaways from today's discussion @DrYak and @fhennig - beyond the issues above:

A v1 of the W-ASAP Dashboard we would like to share with the public actively should include:

• Explainer Section: we have this data, these modes, for these purposes, these disclaimers
• Resistance Mutations –  search known resistance mutations
• Untracked Mutations - search mutations not seen in a set of variants (default: Nextclade Clades)
• Manual Search – search though all mutations by proportion

Further Ideas to be scoped:

• Link out single mutations to CovSpectrum on the Plots (i.e. have quick access to CovSpectum, is this mutaion known?)
• Link out sets of mutations present and colour by abundance to Swiss Model for Protein Structures - see early code here: Add 3D Structures to mutations found "link out to Swiss Model 3D structures" cbg-ethz/v-pipe-scout#115 (remains to be tested further)

Also to be considered:

• How can we make this dashboard also standalone for deployment of W-ASAP instance elsewhere, separate form GenSpectrum for clinical data. (good selling point for open research)

Great work already.

[gordonkoehn]

Cross-linking the GenSpectrum/dashboards main issue here:

• W-ASAP v1 #813