Merge branch 'Genentech:main' into placebo-plot

djnavarro · web-flow · commit e5d9834d6500 · 2025-10-03T19:43:26.000+10:00
diff --git a/.Rbuildignore b/.Rbuildignore
@@ -46,3 +46,5 @@
 
 ^LICENSE$
 ^codecov\.yml$
+
+RPlots.pdf
diff --git a/CRAN-SUBMISSION b/CRAN-SUBMISSION
@@ -1,3 +1,3 @@
-Version: 0.2.2
-Date: 2025-06-06 19:58:38 UTC
-SHA: 4671fb8c1752ff5b9c5b390532a43e1d9c34db49
+Version: 0.2.4
+Date: 2025-10-02 19:39:42 UTC
+SHA: 4a8b64b2a7aafd8af8da891ef69316b97fa47bb9
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: BayesERtools
 Type: Package
 Title: Bayesian Exposure-Response Analysis Tools
-Version: 0.2.3.9000
+Version: 0.2.4.9000
 Authors@R: 
     c(person("Kenta", "Yoshida", , "yoshida.kenta.6@gmail.com", role = c("aut", "cre"),
              comment = c(ORCID = "0000-0003-4967-3831")),
diff --git a/NEWS.md b/NEWS.md
@@ -1,8 +1,20 @@
-# BayesERtools 0.2.4 (in development)
+# BayesERtools 0.2.5 (in development)
 
 ## Major changes
+  
+## Minor changes
+
+# BayesERtools 0.2.4
+
+## Major changes
+
+* Extended covariate effects functionality to support linear regression models 
+  (`ermod_lin`) in addition to binary logistic regression models (`ermod_bin`)
+  (@djnavarro)
+  
+## Minor changes
 
-* Extended covariate effects functionality to support linear regression models (`ermod_lin`) in addition to binary logistic regression models (`ermod_bin`)
+* Fix test for rstanarm update
 
 # BayesERtools 0.2.3
 
diff --git a/tests/testthat/test-loo_kfold.R b/tests/testthat/test-loo_kfold.R
@@ -89,7 +89,7 @@ if (.if_run_ex_eval_mod()) {
 
     expect_equal(
       loo_ermod_bin$estimates[, 1],
-      c(elpd_loo = -38.528662, p_loo = 3.325979, looic = 77.057323)
+      c(elpd_loo = -38.5289466, p_loo = 3.3262640, looic = 77.0578931)
     )
     expect_equal(
       loo_ermod_emax_w_cov$estimates[, 1],

Original file line number	Diff line number	Diff line change
`@@ -89,7 +89,7 @@ if (.if_run_ex_eval_mod()) {`
`89`	`89`
`90`	`90`	`expect_equal(`
`91`	`91`	`loo_ermod_bin$estimates[, 1],`
`92`		`- c(elpd_loo = -38.528662, p_loo = 3.325979, looic = 77.057323)`
	`92`	`+ c(elpd_loo = -38.5289466, p_loo = 3.3262640, looic = 77.0578931)`
`93`	`93`	`)`
`94`	`94`	`expect_equal(`
`95`	`95`	`loo_ermod_emax_w_cov$estimates[, 1],`