From ce5f37354055e78050a531e44a543f91eb950a9b Mon Sep 17 00:00:00 2001 From: Nalini Ganapati Date: Wed, 19 Mar 2025 21:03:03 -0700 Subject: [PATCH] genomicsdb/scripts/genomicsdb_common.py Remove sanity check of column offsets --- genomicsdb/scripts/genomicsdb_common.py | 6 ------ 1 file changed, 6 deletions(-) diff --git a/genomicsdb/scripts/genomicsdb_common.py b/genomicsdb/scripts/genomicsdb_common.py index 3357df1..c3fcab8 100644 --- a/genomicsdb/scripts/genomicsdb_common.py +++ b/genomicsdb/scripts/genomicsdb_common.py @@ -74,12 +74,6 @@ def parse_vidmap_json(vidmap_file, intervals=None): else: # Generated with vcf2genomicsdb_init contig_name = contig["name"] contig_elem = contig - # Sanity check of column offsets - if column_offset != contig_elem["tiledb_column_offset"]: - logging.critical( - f"vidmap file({vidmap_file}) has wrong column offset for {contig_name}. Cannot process vidmap file from contigs({contig_name})" # noqa - ) - break contigs_map[contig_name] = contig_elem column_offset += contig_elem["length"] if all_intervals: