Tests

Implementation of the NTK in Colibri #1934

	name: Tests

	on:
	push:
	branches: [ "main" ]
	pull_request:
	branches: [ "main" ]

	env:
	CACHE_NUMBER: 0

	jobs:
	build:
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v4

	- name: Set up Conda
	uses: conda-incubator/setup-miniconda@v3
	with:
	miniforge-version: latest
	activate-environment: colibri-dev
	use-mamba: true
	auto-activate-base: false

	- name: Cache Conda packages
	id: conda-pkgs
	uses: actions/cache@v3
	with:
	path: ~/conda_pkgs_dir
	key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }}

	- name: Create environment from environment.yml
	shell: bash -l {0}
	run: \|
	mamba env create -n colibri-dev -f environment.yml

	- name: Lint
	shell: bash -l {0}
	run: \|
	pip install flake8
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics

	- name: Test
	shell: bash -l {0}
	run: \|
	pip install pytest pytest-cov
	pytest -p no:warnings colibri/tests --cov=colibri --cov-report=xml --cov-config=.coveragerc

	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v4.2.0
	with:
	token: ${{ secrets.CODECOV_TOKEN }}

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