Merge branch 'main' into ntk

Author: vschutze-alt

.github/workflows/analytic_fit_wmin_l0.yml

@@ -52,6 +52,10 @@ jobs:
         conda activate colibri-dev
         pip install git+https://${{ secrets.COLIBRI_TOKEN }}@github.com/HEP-PBSP/wmin-model.git
 
+    - name: Install colibri
+      shell: bash -l {0}
+      run: pip install -e .
+
     - name: Run analytical fit
       shell: bash -l {0}
       run: |
@@ -74,6 +78,10 @@ jobs:
         conda activate colibri-dev
         pip install git+https://${{ secrets.COLIBRI_TOKEN }}@github.com/HEP-PBSP/wmin-model.git
 
+    - name: Install colibri
+      shell: bash -l {0}
+      run: pip install -e .
+
     - name: Run analytical fit in main
       shell: bash -l {0}
       run: |

.github/workflows/analytic_fit_wmin_l1.yml

@@ -52,6 +52,10 @@ jobs:
         conda activate colibri-dev
         pip install git+https://${{ secrets.COLIBRI_TOKEN }}@github.com/HEP-PBSP/wmin-model.git
 
+    - name: Install colibri
+      shell: bash -l {0}
+      run: pip install -e .
+
     - name: Run analytical fit
       shell: bash -l {0}
       run: |
@@ -74,6 +78,10 @@ jobs:
         conda activate colibri-dev
         pip install git+https://${{ secrets.COLIBRI_TOKEN }}@github.com/HEP-PBSP/wmin-model.git
 
+    - name: Install colibri
+      shell: bash -l {0}
+      run: pip install -e .
+
     - name: Run analytical fit in main
       shell: bash -l {0}
       run: |

.github/workflows/documentation.yml

@@ -30,7 +30,7 @@ jobs:
       - name: Build Sphinx HTML
         run: |
           cd colibri/doc/sphinx
-          make html
+          make html SPHINXOPTS="-W --keep-going"
       - name: Upload Pages artifact
         uses: actions/upload-pages-artifact@v3
         with:

.github/workflows/mc_fit_grid_pdf.yml

@@ -51,7 +51,11 @@ jobs:
         source $(conda info --base)/etc/profile.d/conda.sh  # Initialize Conda
         conda activate colibri-dev
         pip install git+https://${{ secrets.COLIBRI_TOKEN }}@github.com/HEP-PBSP/grid_pdf-model.git
-    
+
+    - name: Install colibri
+      shell: bash -l {0}
+      run: pip install -e .
+
     - name: Run MC fit
       shell: bash -l {0}
       run: |
@@ -74,6 +78,10 @@ jobs:
         conda activate colibri-dev
         pip install git+https://${{ secrets.COLIBRI_TOKEN }}@github.com/HEP-PBSP/grid_pdf-model.git
 
+    - name: Install colibri
+      shell: bash -l {0}
+      run: pip install -e .
+
     - name: Run MC fit in main
       shell: bash -l {0}
       run: |

.github/workflows/mc_fit_wmin.yml

@@ -50,7 +50,11 @@ jobs:
         source $(conda info --base)/etc/profile.d/conda.sh  # Initialize Conda
         conda activate colibri-dev
         pip install git+https://${{ secrets.COLIBRI_TOKEN }}@github.com/HEP-PBSP/wmin-model.git
-   
+    
+    - name: Install colibri
+      shell: bash -l {0}
+      run: pip install -e .   
+    
     - name: Run MC fit
       shell: bash -l {0}
       run: |
@@ -73,6 +77,10 @@ jobs:
         conda activate colibri-dev
         pip install git+https://${{ secrets.COLIBRI_TOKEN }}@github.com/HEP-PBSP/wmin-model.git
 
+    - name: Install colibri
+      shell: bash -l {0}
+      run: pip install -e .
+      
     - name: Run MC fit in main
       shell: bash -l {0}
       run: |

.github/workflows/ns_fit_grid_pdf.yml

@@ -50,6 +50,10 @@ jobs:
         source $(conda info --base)/etc/profile.d/conda.sh  # Initialize Conda
         conda activate colibri-dev
         pip install git+https://${{ secrets.COLIBRI_TOKEN }}@github.com/HEP-PBSP/grid_pdf-model.git
+    
+    - name: Install colibri
+      shell: bash -l {0}
+      run: pip install -e .
 
     - name: Run NS fit
       shell: bash -l {0}
@@ -71,7 +75,11 @@ jobs:
         source $(conda info --base)/etc/profile.d/conda.sh  # Initialize Conda
         conda activate colibri-dev
         pip install git+https://${{ secrets.COLIBRI_TOKEN }}@github.com/HEP-PBSP/grid_pdf-model.git
-
+    
+    - name: Install colibri
+      shell: bash -l {0}
+      run: pip install -e .
+      
     - name: Run NS fit in main
       shell: bash -l {0}
       run: |

.github/workflows/ns_fit_wmin.yml

@@ -51,6 +51,10 @@ jobs:
         conda activate colibri-dev
         pip install git+https://${{ secrets.COLIBRI_TOKEN }}@github.com/HEP-PBSP/wmin-model.git
     
+    - name: Install colibri
+      shell: bash -l {0}
+      run: pip install -e .
+
     - name: Run NS fit
       shell: bash -l {0}
       run: |
@@ -72,7 +76,11 @@ jobs:
         source $(conda info --base)/etc/profile.d/conda.sh  # Initialize Conda
         conda activate colibri-dev
         pip install git+https://${{ secrets.COLIBRI_TOKEN }}@github.com/HEP-PBSP/wmin-model.git
-
+    
+    - name: Install colibri
+      shell: bash -l {0}
+      run: pip install -e .
+      
     - name: Run NS fit in main
       shell: bash -l {0}
       run: |

.github/workflows/ns_fit_wmin_vect.yml

@@ -51,6 +51,10 @@ jobs:
         conda activate colibri-dev
         pip install git+https://${{ secrets.COLIBRI_TOKEN }}@github.com/HEP-PBSP/wmin-model.git
     
+    - name: Install colibri
+      shell: bash -l {0}
+      run: pip install -e .
+
     - name: Run NS fit
       shell: bash -l {0}
       run: |
@@ -73,6 +77,10 @@ jobs:
         conda activate colibri-dev
         pip install git+https://${{ secrets.COLIBRI_TOKEN }}@github.com/HEP-PBSP/wmin-model.git
 
+    - name: Install colibri
+      shell: bash -l {0}
+      run: pip install -e .
+      
     - name: Run NS fit in main
       shell: bash -l {0}
       run: |

README.md

@@ -39,7 +39,7 @@ Documentation regarding the usage and installation is available at <https://hep-
 - Command-line scripts for common workflows (`colibri`, `evolve_fit`, etc.)
 - Integration with external PDF model repositories
 
-<img src="./colibri-diagram-hessian.png" alt="colibri diagram" width="90%">
+<img src="./colibri-diagram-blackjax.png" alt="colibri diagram" width="90%">
 
 ---