Fix tests in deployed docker image

Author: leavauchier

.github/workflows/cicd_deploy.yml

@@ -32,7 +32,7 @@ jobs:
         docker run
         --ipc=host
         ${{ env.TEST_TAG }}
-        python -m pytest -m docker -s --log-cli-level DEBUG
+        python -m pytest -m "not gpao" -s --log-cli-level DEBUG
 
     - name: Set version number
       run: |

Dockerfile

@@ -1,4 +1,4 @@
-FROM mambaorg/micromamba:latest as mamba_pdal
+FROM mambaorg/micromamba:latest AS mamba_pdal
 COPY environment.yml /environment.yml
 USER root
 RUN micromamba env create -n altianalysis -f /environment.yml
@@ -19,6 +19,8 @@ WORKDIR /altianalysis
 RUN mkdir tmp
 COPY altianalysis altianalysis
 COPY test test
+# Copy pyproject to register pytest markers
+COPY pyproject.toml pyproject.toml
 
 # Copy test data that are stored directly in the altianalysis repository
 COPY data/lhd data/lhd