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Expand file tree Collapse file tree Original file line number Diff line number Diff line change @@ -5,7 +5,7 @@ Running MDANSE on a cluster
55
66We expect that you will be running your MDANSE analysis on a cluster
77using Python scripts which can be run from the shell. These will be
8- called within a batch script which you submit to the clusters queuing system.
8+ called within a batch script which you submit to the cluster's queuing system.
99
1010If you installed MDANSE yourself, just activate the MDANSE Python virtual environment
1111in your batch scripts. On clusters using
@@ -16,8 +16,10 @@ environment.
1616Progress bar
1717~~~~~~~~~~~~
1818
19- Normally, when you are running a Python script with an MDANSE analysis, it will
20- display a progress bar. As cluster jobs are not interactive, the progress bar
19+ Normally, when you are running a Python script with an MDANSE analysis
20+ and `tqdm ` is available (possibly through installing the `cli ` extra),
21+ it will attempt to display a progress bar.
22+ As cluster jobs are not interactive, the progress bar
2123will be repeatedly written into the standard output and most likely saved
2224in your log file. Depending on your preference, you may decide just to disable
2325the progress bar in the run method:
Original file line number Diff line number Diff line change @@ -147,7 +147,7 @@ should not depend on any settings stored locally on
147147a specific computer, but should instead contain all the
148148information needed to run a specific analysis type.
149149
150- Alternately , you can create the scripts using the CLI.
150+ Alternatively , you can create the scripts using the CLI.
151151Examples of valid commands include
152152
153153.. code-block :: bash
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