cppcheck log

GenomicsDB cppcheck

Checking example/src/create_tiledb_workspace.cc... Checking example/src/example_ga4gh_scan_operator.cc... Checking example/src/example_libtiledb_variant_driver.cc... Checking example/src/gt_example_query_processor.cc... Checking example/src/gt_mpi_gather.cc... Checking example/src/gt_profile_query_processor.cc... Checking example/src/gt_verifier.cc... Checking example/src/vcf2tiledb.cc... Checking example/src/vcf_histogram.cc... Checking example/src/vcfdiff.cc... Checking src/genomicsdb/query_variants.cc... Checking src/genomicsdb/variant.cc... Checking src/genomicsdb/variant_array_schema.cc... Checking src/genomicsdb/variant_cell.cc... Checking src/genomicsdb/variant_field_data.cc... Checking src/genomicsdb/variant_field_handler.cc... 1/33 files checked 0% done Checking src/genomicsdb/variant_query_config.cc... Checking example/src/gt_verifier.cc: HTSDIR... Checking src/genomicsdb/variant_field_data.cc: DO_PROFILING... Checking src/genomicsdb/variant_array_schema.cc: DO_PROFILING... Checking example/src/vcfdiff.cc: DO_PROFILING... Checking example/src/vcfdiff.cc: HTSDIR... Checking example/src/vcfdiff.cc: NDEBUG;_MSC_VER... Checking src/genomicsdb/variant_cell.cc: DEBUG... Checking example/src/vcfdiff.cc: RAPIDJSON_DOXYGEN_RUNNING... Checking example/src/gt_mpi_gather.cc: DEBUG... Checking example/src/vcf2tiledb.cc: DEBUG... Checking example/src/gt_mpi_gather.cc: DO_PROFILING... Checking example/src/vcf_histogram.cc: DEBUG... Checking example/src/vcf2tiledb.cc: DO_PROFILING... Checking example/src/vcf_histogram.cc: DO_PROFILING... Checking src/genomicsdb/variant_field_data.cc: HTSDIR... Checking example/src/gt_mpi_gather.cc: DUPLICATE_CELL_AT_END... Checking example/src/gt_verifier.cc: NDEBUG... Checking src/genomicsdb/variant_array_schema.cc: HTSDIR... Checking example/src/vcf2tiledb.cc: DUPLICATE_CELL_AT_END... Checking example/src/vcf_histogram.cc: DUPLICATE_CELL_AT_END... Checking example/src/gt_mpi_gather.cc: HTSDIR... Checking example/src/vcf2tiledb.cc: HTSDIR... Checking example/src/vcf_histogram.cc: HTSDIR... Checking example/src/gt_mpi_gather.cc: NDEBUG... Checking example/src/vcf2tiledb.cc: NDEBUG;_MSC_VER... Checking example/src/vcf_histogram.cc: NDEBUG;_MSC_VER... Checking example/src/gt_mpi_gather.cc: NDEBUG;_MSC_VER... Checking example/src/vcf2tiledb.cc: RAPIDJSON_DOXYGEN_RUNNING... Checking example/src/vcf_histogram.cc: RAPIDJSON_DOXYGEN_RUNNING... Checking example/src/gt_verifier.cc: clang... Checking example/src/gt_mpi_gather.cc: RAPIDJSON_DOXYGEN_RUNNING... Checking example/src/gt_profile_query_processor.cc: DEBUG... Checking example/src/example_ga4gh_scan_operator.cc: DEBUG... Checking example/src/gt_verifier.cc: clang;__has_attribute... Checking example/src/example_libtiledb_variant_driver.cc: DEBUG... Checking src/genomicsdb/variant_field_handler.cc: DO_PROFILING... Checking src/genomicsdb/variant_query_config.cc: DEBUG... Checking src/genomicsdb/variant_cell.cc: DO_PROFILING... Checking example/src/gt_example_query_processor.cc: DEBUG... Checking src/genomicsdb/variant.cc: DEBUG... 2/33 files checked 1% done Checking src/genomicsdb/variant_storage_manager.cc... Checking src/genomicsdb/query_variants.cc: DEBUG... Checking src/genomicsdb/variant_field_data.cc: clang... Checking src/genomicsdb/variant_array_schema.cc: clang... Checking src/genomicsdb/variant_cell.cc: HTSDIR... Checking src/genomicsdb/variant_field_data.cc: clang;has_attribute... Checking src/genomicsdb/variant_array_schema.cc: clang;has_attribute... Checking src/genomicsdb/variant_storage_manager.cc: DEBUG... Checking example/src/example_ga4gh_scan_operator.cc: DO_PROFILING... Checking example/src/gt_profile_query_processor.cc: DO_PROFILING... Checking src/genomicsdb/variant_query_config.cc: DO_PROFILING... Checking example/src/example_libtiledb_variant_driver.cc: DO_PROFILING... [dependencies/RapidJSON/include/rapidjson/internal/meta.h:125]: (error) syntax error Checking src/genomicsdb/variant_field_handler.cc: HTSDIR... 3/33 files checked 1% done Checking src/loader/load_operators.cc... 4/33 files checked 2% done Checking src/loader/tiledb_loader.cc... Checking example/src/gt_example_query_processor.cc: DO_PROFILING... Checking src/genomicsdb/variant.cc: DO_PROFILING... Checking src/genomicsdb/variant_storage_manager.cc: DO_PROFILING... Checking src/genomicsdb/variant_cell.cc: clang... Checking src/genomicsdb/query_variants.cc: DO_PROFILING... Checking src/loader/load_operators.cc: DEBUG... Checking src/loader/load_operators.cc: DO_PROFILING... Checking src/loader/load_operators.cc: DO_PROFILING;HTSDIR... Checking src/loader/tiledb_loader.cc: DEBUG... Checking example/src/example_ga4gh_scan_operator.cc: DUPLICATE_CELL_AT_END... Checking src/loader/tiledb_loader.cc: DO_PROFILING... Checking src/genomicsdb/variant_storage_manager.cc: HTSDIR... Checking src/loader/load_operators.cc: DUPLICATE_CELL_AT_END... Checking src/loader/tiledb_loader.cc: DUPLICATE_CELL_AT_END... Checking example/src/gt_profile_query_processor.cc: DUPLICATE_CELL_AT_END... Checking src/loader/load_operators.cc: HTSDIR... Checking src/loader/tiledb_loader.cc: HTSDIR... Checking src/genomicsdb/variant_query_config.cc: DUPLICATE_CELL_AT_END... Checking src/loader/load_operators.cc: HTSDIR;NDEBUG... Checking example/src/example_libtiledb_variant_driver.cc: DUPLICATE_CELL_AT_END... Checking src/loader/tiledb_loader.cc: HTSDIR;PRODUCE_CSV_CELLS... Checking src/loader/load_operators.cc: NDEBUG;MSC_VER... Checking src/loader/load_operators.cc: RAPIDJSON_DOXYGEN_RUNNING... Checking src/loader/tiledb_loader.cc: NDEBUG;MSC_VER... Checking src/loader/tiledb_loader.cc: RAPIDJSON_DOXYGEN_RUNNING... Checking src/genomicsdb/variant_cell.cc: clang;has_attribute... Checking example/src/gt_example_query_processor.cc: DUPLICATE_CELL_AT_END... Checking src/genomicsdb/variant.cc: DUPLICATE_CELL_AT_END... [dependencies/RapidJSON/include/rapidjson/internal/biginteger.h:37]: (error) Array 'digits[-1]' accessed at index 0, which is out of bounds. [dependencies/RapidJSON/include/rapidjson/internal/biginteger.h:42]: (error) Array 'digits[-1]' accessed at index 0, which is out of bounds. [dependencies/RapidJSON/include/rapidjson/internal/biginteger.h:65]: (error) Array 'digits[-1]' accessed at index 0, which is out of bounds. [dependencies/RapidJSON/include/rapidjson/internal/biginteger.h:71]: (error) Array 'digits[-1]' accessed at index 0, which is out of bounds. [dependencies/RapidJSON/include/rapidjson/internal/biginteger.h:72]: (error) Array 'digits[-1]' accessed at index 0, which is out of bounds. [dependencies/RapidJSON/include/rapidjson/internal/biginteger.h:143]: (error) Array 'digits[-1]' accessed at index 0, which is out of bounds. [dependencies/RapidJSON/include/rapidjson/internal/biginteger.h:159]: (error) Array 'digits[-1]' accessed at index 0, which is out of bounds. [dependencies/RapidJSON/include/rapidjson/internal/biginteger.h:221]: (error) Array 'digits[-1]' accessed at index 0, which is out of bounds. Checking src/genomicsdb/variant_field_handler.cc: clang... 5/33 files checked 3% done Checking src/loader/tiledb_loader_file_base.cc... Checking example/src/example_ga4gh_scan_operator.cc: HTSDIR... Checking src/genomicsdb/variant_storage_manager.cc: clang... Checking example/src/gt_profile_query_processor.cc: HTSDIR... Checking src/genomicsdb/variant_query_config.cc: HTSDIR... Checking src/genomicsdb/query_variants.cc: DUPLICATE_CELL_AT_END... Checking example/src/example_libtiledb_variant_driver.cc: HTSDIR... Checking example/src/vcfdiff.cc: RAPIDJSON_GNUC... Checking example/src/vcfdiff.cc: RAPIDJSON_NOMEMBERITERATORCLASS... Checking example/src/vcfdiff.cc: RAPIDJSON_SIMD;_MSC_VER... Checking example/src/vcfdiff.cc: RAPIDJSON_SSE2... Checking example/src/vcfdiff.cc: RAPIDJSON_SSE2;_MSC_VER... Checking example/src/vcfdiff.cc: RAPIDJSON_SSE42... Checking example/src/vcfdiff.cc: RAPIDJSON_SSE42;_MSC_VER... Checking example/src/vcfdiff.cc: STATIC_IMAXDIV... Checking example/src/vcfdiff.cc: _BIG_ENDIAN... Checking src/loader/tiledb_loader_file_base.cc: DO_PROFILING... Checking example/src/gt_example_query_processor.cc: HTSDIR... Checking src/genomicsdb/variant_storage_manager.cc: clang;__has_attribute... Checking src/loader/tiledb_loader_file_base.cc: HTSDIR... Checking example/src/vcf_histogram.cc: RAPIDJSON_GNUC... Checking src/genomicsdb/variant.cc: HTSDIR... Checking example/src/vcf_histogram.cc: RAPIDJSON_NOMEMBERITERATORCLASS... Checking src/genomicsdb/variant_field_handler.cc: clang;__has_attribute... Checking example/src/vcf_histogram.cc: RAPIDJSON_SIMD;_MSC_VER... Checking example/src/vcf_histogram.cc: RAPIDJSON_SSE2... Checking example/src/vcf2tiledb.cc: RAPIDJSON_GNUC... 6/33 files checked 7% done Checking src/loader/tiledb_loader_text_file.cc... Checking example/src/vcf_histogram.cc: RAPIDJSON_SSE2;_MSC_VER... Checking example/src/vcf2tiledb.cc: RAPIDJSON_NOMEMBERITERATORCLASS... Checking example/src/vcf_histogram.cc: RAPIDJSON_SSE42... Checking example/src/vcf2tiledb.cc: RAPIDJSON_SIMD;_MSC_VER... Checking example/src/vcf_histogram.cc: RAPIDJSON_SSE42;_MSC_VER... Checking example/src/vcf2tiledb.cc: RAPIDJSON_SSE2... Checking example/src/vcf_histogram.cc: STATIC_IMAXDIV... Checking example/src/vcf2tiledb.cc: RAPIDJSON_SSE2;_MSC_VER... Checking example/src/vcf_histogram.cc: USE_GPERFTOOLS... Checking example/src/vcf2tiledb.cc: RAPIDJSON_SSE42... Checking example/src/vcf_histogram.cc: _BIG_ENDIAN... Checking example/src/vcf2tiledb.cc: RAPIDJSON_SSE42;_MSC_VER... Checking example/src/vcf2tiledb.cc: STATIC_IMAXDIV... Checking example/src/vcf2tiledb.cc: USE_GPERFTOOLS... Checking example/src/vcf2tiledb.cc: _BIG_ENDIAN... Checking example/src/example_ga4gh_scan_operator.cc: clang... Checking src/genomicsdb/query_variants.cc: HTSDIR... Checking src/loader/tiledb_loader_text_file.cc: DO_PROFILING... Checking src/loader/tiledb_loader_file_base.cc: PRODUCE_CSV_CELLS... Checking src/genomicsdb/variant_query_config.cc: clang... Checking src/loader/tiledb_loader_text_file.cc: HTSDIR... Checking example/src/gt_profile_query_processor.cc: clang... Checking example/src/example_libtiledb_variant_driver.cc: USE_GPERFTOOLS... Checking src/loader/tiledb_loader_file_base.cc: clang... Checking example/src/gt_mpi_gather.cc: RAPIDJSON_GNUC... 7/33 files checked 10% done Checking src/query_operations/broad_combined_gvcf.cc... Checking example/src/gt_mpi_gather.cc: RAPIDJSON_NOMEMBERITERATORCLASS... Checking example/src/gt_mpi_gather.cc: RAPIDJSON_SIMD;_MSC_VER... Checking example/src/gt_example_query_processor.cc: USE_GPERFTOOLS... Checking example/src/gt_mpi_gather.cc: RAPIDJSON_SSE2... Checking example/src/gt_mpi_gather.cc: RAPIDJSON_SSE2;_MSC_VER... Checking src/query_operations/broad_combined_gvcf.cc: DO_PROFILING;HTSDIR... Checking example/src/gt_mpi_gather.cc: RAPIDJSON_SSE42... Checking example/src/gt_mpi_gather.cc: RAPIDJSON_SSE42;_MSC_VER... Checking example/src/gt_mpi_gather.cc: STATIC_IMAXDIV... Checking src/loader/tiledb_loader_file_base.cc: clang;__has_attribute... Checking example/src/gt_mpi_gather.cc: USE_BIGMPI... Checking example/src/example_ga4gh_scan_operator.cc: clang;__has_attribute... Checking example/src/gt_mpi_gather.cc: USE_GPERFTOOLS... Checking example/src/gt_mpi_gather.cc: _BIG_ENDIAN... Checking src/loader/tiledb_loader_text_file.cc: clang... Checking src/genomicsdb/variant_query_config.cc: clang;__has_attribute... Checking example/src/gt_profile_query_processor.cc: clang;__has_attribute... 8/33 files checked 13% done Checking src/query_operations/variant_operations.cc... Checking example/src/example_libtiledb_variant_driver.cc: clang... Checking src/loader/tiledb_loader_text_file.cc: clang;__has_attribute... Checking src/genomicsdb/variant.cc: clang... 9/33 files checked 14% done Checking src/utils/command_line.cc... 10/33 files checked 14% done Checking src/utils/histogram.cc... Checking example/src/gt_example_query_processor.cc: clang... 11/33 files checked 16% done Checking src/utils/json_config.cc... 12/33 files checked 16% done Checking src/utils/known_field_info.cc... Checking src/genomicsdb/query_variants.cc: clang... 13/33 files checked 18% done Checking src/utils/libtiledb_variant.cc... 14/33 files checked 18% done Checking src/utils/lut.cc... Checking example/src/example_libtiledb_variant_driver.cc: clang;__has_attribute... Checking src/utils/json_config.cc: DO_PROFILING... Checking src/utils/known_field_info.cc: DO_PROFILING... Checking src/utils/json_config.cc: HTSDIR... Checking src/query_operations/broad_combined_gvcf.cc: HTSDIR... Checking src/utils/json_config.cc: NDEBUG... Checking src/utils/json_config.cc: NDEBUG;_MSC_VER... Checking src/utils/json_config.cc: RAPIDJSON_DOXYGEN_RUNNING... 15/33 files checked 19% done Checking src/utils/vid_mapper.cc... Checking example/src/vcfdiff.cc: _LITTLE_ENDIAN... Checking src/loader/load_operators.cc: RAPIDJSON_GNUC... Checking src/loader/load_operators.cc: RAPIDJSON_NOMEMBERITERATORCLASS... Checking src/genomicsdb/variant.cc: clang;__has_attribute... Checking src/loader/load_operators.cc: RAPIDJSON_SIMD;_MSC_VER... Checking src/query_operations/variant_operations.cc: DEBUG... Checking src/loader/load_operators.cc: RAPIDJSON_SSE2... Checking src/loader/load_operators.cc: RAPIDJSON_SSE2;_MSC_VER... Checking src/utils/known_field_info.cc: HTSDIR... Checking example/src/gt_example_query_processor.cc: clang;__has_attribute... Checking src/loader/load_operators.cc: RAPIDJSON_SSE42... Checking src/loader/load_operators.cc: RAPIDJSON_SSE42;_MSC_VER... Checking src/loader/load_operators.cc: STATIC_IMAXDIV... Checking src/loader/load_operators.cc: _BIG_ENDIAN... Checking src/utils/vid_mapper.cc: DO_PROFILING... Checking src/loader/tiledb_loader.cc: RAPIDJSON_GNUC... Checking src/utils/vid_mapper.cc: HTSDIR... Checking src/loader/tiledb_loader.cc: RAPIDJSON_NOMEMBERITERATORCLASS... Checking src/utils/vid_mapper.cc: NDEBUG;_MSC_VER... Checking src/loader/tiledb_loader.cc: RAPIDJSON_SIMD;_MSC_VER... Checking src/utils/vid_mapper.cc: RAPIDJSON_DOXYGEN_RUNNING... Checking src/loader/tiledb_loader.cc: RAPIDJSON_SSE2... Checking src/loader/tiledb_loader.cc: RAPIDJSON_SSE2;_MSC_VER... Checking src/loader/tiledb_loader.cc: RAPIDJSON_SSE42... Checking src/loader/tiledb_loader.cc: RAPIDJSON_SSE42;_MSC_VER... Checking src/genomicsdb/query_variants.cc: clang;__has_attribute... Checking src/loader/tiledb_loader.cc: STATIC_IMAXDIV... 16/33 files checked 21% done Checking src/vcf/vcf2binary.cc... Checking src/utils/libtiledb_variant.cc: DEBUG... Checking src/loader/tiledb_loader.cc: _BIG_ENDIAN... Checking src/vcf/vcf2binary.cc: DO_PROFILING... Checking src/vcf/vcf2binary.cc: HTSDIR... Checking src/utils/known_field_info.cc: clang... 17/33 files checked 22% done Checking src/vcf/vcf_adapter.cc... Checking src/query_operations/variant_operations.cc: DO_PROFILING... 18/33 files checked 30% done Checking example/src/vcf_histogram.cc: _LITTLE_ENDIAN... Checking src/vcf/vcf_adapter.cc: DO_PROFILING... Checking src/vcf/vcf_adapter.cc: HTSDIR... Checking example/src/vcf2tiledb.cc: _LITTLE_ENDIAN... Checking src/utils/known_field_info.cc: clang;__has_attribute... Checking src/query_operations/broad_combined_gvcf.cc: clang... Checking src/query_operations/broad_combined_gvcf.cc: clang;__has_attribute... 19/33 files checked 35% done Checking src/utils/libtiledb_variant.cc: DO_PROFILING... 20/33 files checked 37% done Checking src/vcf/vcf2binary.cc: PRODUCE_CSV_CELLS... Checking src/vcf/vcf2binary.cc: clang... Checking src/vcf/vcf_adapter.cc: clang... Checking src/vcf/vcf2binary.cc: clang;__has_attribute... Checking src/vcf/vcf_adapter.cc: clang;__has_attribute... 21/33 files checked 47% done 22/33 files checked 48% done 23/33 files checked 55% done Checking src/query_operations/variant_operations.cc: DUPLICATE_CELL_AT_END... Checking src/utils/libtiledb_variant.cc: DUPLICATE_CELL_AT_END... Checking example/src/vcfdiff.cc: _MSC_VER... Checking example/src/vcfdiff.cc: _MSC_VER;_M_AMD64... Checking example/src/vcfdiff.cc: _MSC_VER;_M_ARM... Checking example/src/gt_mpi_gather.cc: _LITTLE_ENDIAN... Checking src/utils/libtiledb_variant.cc: HTSDIR... Checking src/query_operations/variant_operations.cc: HTSDIR... Checking src/utils/vid_mapper.cc: RAPIDJSON_GNUC... Checking src/utils/vid_mapper.cc: RAPIDJSON_NOMEMBERITERATORCLASS... Checking src/utils/vid_mapper.cc: RAPIDJSON_SIMD;_MSC_VER... Checking src/utils/vid_mapper.cc: RAPIDJSON_SSE2... Checking src/utils/vid_mapper.cc: RAPIDJSON_SSE2;_MSC_VER... Checking src/utils/vid_mapper.cc: RAPIDJSON_SSE42... Checking src/utils/vid_mapper.cc: RAPIDJSON_SSE42;_MSC_VER... Checking src/utils/vid_mapper.cc: STATIC_IMAXDIV... Checking src/utils/vid_mapper.cc: _BIG_ENDIAN... Checking src/utils/json_config.cc: RAPIDJSON_GNUC... Checking src/utils/json_config.cc: RAPIDJSON_NOMEMBERITERATORCLASS... Checking src/utils/json_config.cc: RAPIDJSON_SIMD;_MSC_VER... Checking src/utils/json_config.cc: RAPIDJSON_SSE2... Checking src/utils/json_config.cc: RAPIDJSON_SSE2;_MSC_VER... Checking src/utils/json_config.cc: RAPIDJSON_SSE42... Checking src/utils/json_config.cc: RAPIDJSON_SSE42;_MSC_VER... Checking src/utils/json_config.cc: STATIC_IMAXDIV... Checking src/utils/json_config.cc: _BIG_ENDIAN... Checking src/loader/load_operators.cc: _LITTLE_ENDIAN... Checking example/src/vcf_histogram.cc: _MSC_VER... Checking example/src/vcf_histogram.cc: _MSC_VER;_M_AMD64... Checking example/src/vcf_histogram.cc: _MSC_VER;_M_ARM... Checking src/utils/libtiledb_variant.cc: clang... Checking example/src/vcf2tiledb.cc: _MSC_VER... Checking example/src/vcf2tiledb.cc: _MSC_VER;_M_AMD64... Checking example/src/vcf2tiledb.cc: _MSC_VER;_M_ARM... Checking src/query_operations/variant_operations.cc: clang... Checking src/loader/tiledb_loader.cc: _LITTLE_ENDIAN... Checking src/utils/libtiledb_variant.cc: clang;__has_attribute... Checking src/query_operations/variant_operations.cc: clang;__has_attribute... Checking example/src/vcfdiff.cc: _WIN64... Checking example/src/vcfdiff.cc: BYTE_ORDER... Checking example/src/vcfdiff.cc: GLIBC... Checking example/src/vcfdiff.cc: GNUC... Checking example/src/vcfdiff.cc: __clang... Checking example/src/vcfdiff.cc: clang... Checking example/src/vcfdiff.cc: clang;__has_attribute... Checking example/src/vcfdiff.cc: __cplusplus... 24/33 files checked 65% done 25/33 files checked 66% done Checking src/utils/vid_mapper.cc: _LITTLE_ENDIAN... 26/33 files checked 72% done Checking example/src/gt_mpi_gather.cc: _MSC_VER... Checking example/src/gt_mpi_gather.cc: _MSC_VER;_M_AMD64... Checking example/src/gt_mpi_gather.cc: _MSC_VER;_M_ARM... Checking src/utils/json_config.cc: _LITTLE_ENDIAN... Checking example/src/vcf_histogram.cc: _WIN64... Checking example/src/vcf_histogram.cc: BYTE_ORDER... Checking example/src/vcf_histogram.cc: GLIBC... Checking example/src/vcf_histogram.cc: GNUC... Checking example/src/vcf_histogram.cc: __clang... Checking example/src/vcf_histogram.cc: clang... Checking example/src/vcf_histogram.cc: clang;__has_attribute... Checking example/src/vcf_histogram.cc: __cplusplus... 27/33 files checked 73% done Checking example/src/vcf2tiledb.cc: _WIN64... Checking example/src/vcf2tiledb.cc: BYTE_ORDER... Checking example/src/vcf2tiledb.cc: GLIBC... Checking example/src/vcf2tiledb.cc: GNUC... Checking src/loader/load_operators.cc: _MSC_VER... Checking example/src/vcf2tiledb.cc: __clang... Checking src/loader/load_operators.cc: _MSC_VER;_M_AMD64... Checking example/src/vcf2tiledb.cc: clang... Checking src/loader/load_operators.cc: _MSC_VER;_M_ARM... Checking example/src/vcf2tiledb.cc: clang;__has_attribute... Checking example/src/vcf2tiledb.cc: __cplusplus... 28/33 files checked 73% done Checking src/loader/tiledb_loader.cc: _MSC_VER... Checking src/utils/vid_mapper.cc: _MSC_VER... Checking src/loader/tiledb_loader.cc: _MSC_VER;_M_AMD64... Checking src/utils/vid_mapper.cc: _MSC_VER;_M_AMD64... Checking src/loader/tiledb_loader.cc: _MSC_VER;_M_ARM... Checking src/utils/vid_mapper.cc: _MSC_VER;_M_ARM... Checking src/utils/json_config.cc: _MSC_VER... Checking src/utils/json_config.cc: _MSC_VER;_M_AMD64... Checking example/src/gt_mpi_gather.cc: _WIN64... Checking src/utils/json_config.cc: _MSC_VER;_M_ARM... Checking example/src/gt_mpi_gather.cc: BYTE_ORDER... Checking example/src/gt_mpi_gather.cc: GLIBC... Checking example/src/gt_mpi_gather.cc: GNUC... Checking example/src/gt_mpi_gather.cc: __clang... Checking example/src/gt_mpi_gather.cc: clang... Checking example/src/gt_mpi_gather.cc: clang;__has_attribute... Checking example/src/gt_mpi_gather.cc: __cplusplus... 29/33 files checked 78% done Checking src/loader/load_operators.cc: _WIN64... Checking src/loader/load_operators.cc: BYTE_ORDER... Checking src/loader/load_operators.cc: GLIBC... Checking src/loader/load_operators.cc: GNUC... Checking src/loader/load_operators.cc: __clang... Checking src/loader/load_operators.cc: clang... Checking src/loader/load_operators.cc: clang;__has_attribute... Checking src/loader/load_operators.cc: __cplusplus... 30/33 files checked 81% done Checking src/utils/vid_mapper.cc: _WIN64... Checking src/utils/vid_mapper.cc: BYTE_ORDER... Checking src/utils/vid_mapper.cc: GLIBC... Checking src/utils/vid_mapper.cc: GNUC... Checking src/utils/vid_mapper.cc: __clang... Checking src/utils/vid_mapper.cc: clang... Checking src/utils/vid_mapper.cc: clang;__has_attribute... Checking src/utils/vid_mapper.cc: __cplusplus... 31/33 files checked 86% done Checking src/loader/tiledb_loader.cc: _WIN64... Checking src/loader/tiledb_loader.cc: BYTE_ORDER... Checking src/loader/tiledb_loader.cc: GLIBC... Checking src/loader/tiledb_loader.cc: GNUC... Checking src/loader/tiledb_loader.cc: __clang... Checking src/loader/tiledb_loader.cc: clang... Checking src/loader/tiledb_loader.cc: clang;__has_attribute... Checking src/loader/tiledb_loader.cc: __cplusplus... 32/33 files checked 93% done Checking src/utils/json_config.cc: _WIN64... Checking src/utils/json_config.cc: BYTE_ORDER... Checking src/utils/json_config.cc: GLIBC... Checking src/utils/json_config.cc: GNUC... Checking src/utils/json_config.cc: __clang... Checking src/utils/json_config.cc: clang... Checking src/utils/json_config.cc: clang;__has_attribute... Checking src/utils/json_config.cc: __cplusplus... 33/33 files checked 100% done

TileDB cppcheck

Checking core/src/array/array.cc... Checking core/src/array/array_iterator.cc... Checking core/src/array/array_read_state.cc... Checking core/src/array/array_schema.cc... Checking core/src/c_api/c_api.cc... Checking core/src/fragment/book_keeping.cc... Checking core/src/fragment/fragment.cc... Checking core/src/fragment/read_state.cc... Checking core/src/array/array_iterator.cc: VERBOSE=1... Checking core/src/fragment/fragment.cc: VERBOSE=1... [core/src/array/array.cc:281]: (error) Memory leak: buffers [core/src/array/array.cc:281]: (error) Memory leak: buffer_sizes Checking core/src/array/array.cc: GNU_PARALLEL... Checking core/src/fragment/book_keeping.cc: VERBOSE=1... Checking core/src/c_api/c_api.cc: VERBOSE=1... Checking core/src/fragment/fragment.cc: VERBOSE=2... Checking core/src/array/array_iterator.cc: VERBOSE=2... Checking core/src/array/array.cc: VERBOSE=1... [core/src/array/array_read_state.cc:656]: (error) Uninitialized variable: cell_size_var [core/src/array/array_read_state.cc:661]: (error) Uninitialized variable: cell_size_var Checking core/src/array/array_read_state.cc: VERBOSE=1... [core/src/fragment/read_state.cc:2002]: (error) Common realloc mistake: 'tile_compressed_' nulled but not freed upon failure [core/src/fragment/read_state.cc:955]: (error) Memory leak: mbr_tile_overlap_subarray 1/58 files checked 1% done Checking core/src/fragment/write_state.cc... 2/58 files checked 3% done Checking core/src/metadata/metadata.cc... Checking core/src/fragment/read_state.cc: VERBOSE=1... [core/src/array/array_schema.cc:1720]: (error) Uninitialized variable: size Checking core/src/array/array_schema.cc: VERBOSE=1... Checking core/src/fragment/book_keeping.cc: VERBOSE=2... Checking core/src/array/array.cc: VERBOSE=2... Checking core/src/c_api/c_api.cc: VERBOSE=2... [core/src/metadata/metadata.cc:329]: (error) Common realloc mistake: 'keys_offsets' nulled but not freed upon failure Checking core/src/metadata/metadata.cc: VERBOSE=1... 3/58 files checked 6% done Checking core/src/metadata/metadata_iterator.cc... 4/58 files checked 11% done Checking core/src/misc/hilbert_curve.cc... 5/58 files checked 12% done Checking core/src/misc/utils.cc... Checking core/src/array/array_read_state.cc: VERBOSE=2... Checking core/src/metadata/metadata.cc: VERBOSE=2... 6/58 files checked 18% done Checking core/src/storage_manager/storage_manager.cc... [core/src/fragment/write_state.cc:252]: (error) Common realloc mistake: 'tile_compressed_' nulled but not freed upon failure [core/src/fragment/write_state.cc:311]: (error) Common realloc mistake: 'tile_compressed_' nulled but not freed upon failure Checking core/src/metadata/metadata_iterator.cc: VERBOSE=1... Checking core/src/fragment/read_state.cc: VERBOSE=2... Checking core/src/fragment/write_state.cc: GNU_PARALLEL... Checking core/src/misc/utils.cc: VERBOSE=1... 7/58 files checked 20% done Checking examples/src/tiledb_array_consolidate.cc... 8/58 files checked 21% done Checking examples/src/tiledb_array_create_dense_A.cc... Checking core/src/metadata/metadata_iterator.cc: VERBOSE=2... Checking core/src/array/array_schema.cc: VERBOSE=2... 9/58 files checked 21% done Checking examples/src/tiledb_array_create_dense_var_A.cc... 10/58 files checked 21% done Checking examples/src/tiledb_array_create_sparse_A.cc... 11/58 files checked 22% done Checking examples/src/tiledb_array_create_sparse_var_A.cc... 12/58 files checked 22% done Checking examples/src/tiledb_array_get_schema_dense_B.cc... Checking core/src/misc/utils.cc: VERBOSE=2... 13/58 files checked 23% done Checking examples/src/tiledb_array_iterator_read_dense_B.cc... 14/58 files checked 34% done Checking examples/src/tiledb_array_iterator_read_sparse_B.cc... [examples/src/tiledb_array_iterator_read_dense_B.cc:49]: (error) Uninitialized variable: b 15/58 files checked 34% done Checking examples/src/tiledb_array_load_schema_sparse_B.cc... 16/58 files checked 35% done Checking examples/src/tiledb_array_read_dense_A.cc... [examples/src/tiledb_array_iterator_read_sparse_B.cc:49]: (error) Uninitialized variable: b 17/58 files checked 35% done Checking examples/src/tiledb_array_read_dense_var_A.cc... Checking core/src/storage_manager/storage_manager.cc: VERBOSE=1... 18/58 files checked 35% done 19/58 files checked 36% done Checking examples/src/tiledb_array_read_sparse_A.cc... Checking examples/src/tiledb_array_read_sparse_var_A.cc... 20/58 files checked 37% done Checking examples/src/tiledb_array_update_create_dense_B.cc... 21/58 files checked 37% done Checking examples/src/tiledb_array_update_create_sparse_B.cc... 22/58 files checked 37% done Checking examples/src/tiledb_array_update_dense_A.cc... 23/58 files checked 38% done Checking examples/src/tiledb_array_update_read_dense_B.cc... 24/58 files checked 38% done Checking examples/src/tiledb_array_update_read_sparse_B.cc... 25/58 files checked 38% done Checking examples/src/tiledb_array_update_write_dense_B_1.cc... 26/58 files checked 39% done Checking examples/src/tiledb_array_update_write_dense_B_2.cc... 27/58 files checked 43% done Checking examples/src/tiledb_array_update_write_dense_B_3.cc... 28/58 files checked 44% done Checking examples/src/tiledb_array_update_write_sparse_B_1.cc... 29/58 files checked 44% done Checking examples/src/tiledb_array_update_write_sparse_B_2.cc... 30/58 files checked 44% done Checking examples/src/tiledb_array_write_dense_A.cc... 31/58 files checked 45% done Checking examples/src/tiledb_array_write_dense_var_A.cc... 32/58 files checked 45% done Checking examples/src/tiledb_array_write_sparse_A.cc... 33/58 files checked 45% done Checking examples/src/tiledb_array_write_sparse_unsorted_A.cc... 34/58 files checked 46% done Checking examples/src/tiledb_array_write_sparse_unsorted_var_A.cc... 35/58 files checked 46% done Checking examples/src/tiledb_array_write_sparse_var_A.cc... Checking core/src/fragment/write_state.cc: VERBOSE=1... 36/58 files checked 46% done Checking examples/src/tiledb_clear.cc... 37/58 files checked 47% done Checking examples/src/tiledb_delete.cc... 38/58 files checked 47% done Checking examples/src/tiledb_group_create.cc... Checking core/src/fragment/read_state.cc: _TILEDB_USE_MMAP... 39/58 files checked 47% done Checking examples/src/tiledb_ls.cc... 40/58 files checked 47% done 41/58 files checked 47% done Checking examples/src/tiledb_ls_workspaces.cc... Checking examples/src/tiledb_metadata_consolidate.cc... 42/58 files checked 48% done Checking examples/src/tiledb_metadata_create.cc... 43/58 files checked 48% done Checking examples/src/tiledb_metadata_iterator_read.cc... 44/58 files checked 48% done Checking examples/src/tiledb_metadata_load_schema.cc... 45/58 files checked 48% done Checking examples/src/tiledb_metadata_read.cc... 46/58 files checked 48% done Checking examples/src/tiledb_metadata_write.cc... 47/58 files checked 49% done Checking examples/src/tiledb_move.cc... 48/58 files checked 49% done Checking examples/src/tiledb_workspace_create.cc... 49/58 files checked 49% done Checking test/src/array/array_schema_spec.cc... 50/58 files checked 49% done Checking core/src/storage_manager/storage_manager.cc: VERBOSE=2... Checking test/src/c_api/c_api_spec.cc... 51/58 files checked 49% done 52/58 files checked 50% done 53/58 files checked 51% done 54/58 files checked 63% done 55/58 files checked 65% done 56/58 files checked 74% done Checking core/src/fragment/write_state.cc: VERBOSE=2... 57/58 files checked 88% done 58/58 files checked 100% done