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update ref files of integration tests
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14 files changed

+123
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#Command-line:
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"${KAPPABIN}"KaSa example_agents_params.ka --output-directory output --debugging-mode -syntax 4 || exit 0
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"${KAPPABIN}"KaSim example_agents_params.ka -l 2000 -d output -p 20 -syntax 4 -seed 858703540 || exit 0

tests/integration/boolean_parameters/conflict/output/LOG.ref

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------------------------------------------------------------
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rule File "example_conflict.ka", line 12, characters 0-21: could be applied if P.
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rule ~namef (File "example_conflict.ka", line 13, characters 0-31:) could be applied if P.
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rule 'conflict_0 (File "example_conflict.ka", line 14, characters 0-50:) could be applied if P.and.@co-A-x-y.and.x.and.y.
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rule File "example_conflict.ka", line 14, characters 0-50: could be applied if P.and.(~@co-A-x-y).and.x.and.y.
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rule File "example_conflict.ka", line 14, characters 0-50: could be applied if P.and.@co-A-x-y.and.x.and.y.
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rule 'conflict_1 (File "example_conflict.ka", line 15, characters 0-50:) could be applied if (B.or.C).and.P.and.@co-A-x-y.
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rule File "example_conflict.ka", line 15, characters 0-50: could be applied if (B.or.C).and.P.and.(~@co-A-x-y).
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rule File "example_conflict.ka", line 15, characters 0-50: could be applied if (B.or.C).and.P.and.@co-A-x-y.
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------------------------------------------------------------
2020
* There are some non creatable agents
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#Command-line:
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"${KAPPABIN}"KaSa example_double_bonds2.ka --output-directory output --debugging-mode -syntax 4 || exit 0
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#Download sources/binaries at https://github.com/Kappa-Dev/KaSim
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#
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#Command line is: KaSa example_double_bonds2.ka --output-directory output --debugging-mode -syntax 4
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#
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#This file contains the description of the contact map in dot.
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#Please use graphviz (http://www.graphviz.org) or OmniGraffle to export it to a PDF
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#
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graph G{
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subgraph cluster0 {
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0.0 [style = filled label = "y" shape=circle color = yellow size = "5"]
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0.1 [style = filled label = "x" shape=circle color = yellow size = "5"]
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label = "A"; shape=box; color = blue
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} ;
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0.0 -- 0.0
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0.1 -- 0.1
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}

tests/integration/boolean_parameters/parallel_bond2/output/error.log.ref

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#This file has been computed by KaSa: a Static Analyzer for Kappa (Kappa Static Analyzer (v4.1.3.1-187-g0b1b6abee-dirty))
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#Download sources/binaries at https://github.com/Kappa-Dev/KaSim
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#
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#Analysis launched at 2025/06/27 09:46:09 (GMT+2) on Margherita
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#Command line is: KaSa example_double_bonds2.ka --output-directory output --debugging-mode -syntax 4
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#
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#This file contains the description of the influence map in dot.
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#Please use graphviz (http://www.graphviz.org) or OmniGraffle to export it to a PDF
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#
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digraph G{
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"0:A(x[.],y[.]),A(x[.],y[.])->A(x[.],y[1]),A(x[.],y[1])" [shape=box fillcolor="#87ceeb" style=filled];
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"1:A(x[.],y[.]),A(x[.],y[.])->A(x[1],y[.]),A(x[1],y[.])" [shape=box fillcolor="#87ceeb" style=filled];
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"2:A(x[1],y[.]),A(x[1],y[.])->A(x[2],y[1]),A(x[2],y[1])" [shape=box fillcolor="#87ceeb" style=filled];
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"3:A(x[.],y[1]),A(x[.],y[1])->A(x[1],y[2]),A(x[1],y[2])" [shape=box fillcolor="#87ceeb" style=filled];
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"4:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" [shape=box fillcolor="#87ceeb" style=filled];
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"5:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" [shape=box fillcolor="#87ceeb" style=filled];
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"6:A(x[1],y[.]),A(x[1],y[.])->A(x[2],y[1]),A(x[2],y[1])" [shape=box fillcolor="#87ceeb" style=filled];
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"7:A(x[.],y[1]),A(x[.],y[1])->A(x[1],y[2]),A(x[1],y[2])" [shape=box fillcolor="#87ceeb" style=filled];
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"8:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" [shape=box fillcolor="#87ceeb" style=filled];
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"9:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" [shape=box fillcolor="#87ceeb" style=filled];
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"Trimer" [shape=ellipse fillcolor="#98fb98" style=filled];
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"0:A(x[.],y[.]),A(x[.],y[.])->A(x[.],y[1]),A(x[.],y[1])" -> "3:A(x[.],y[1]),A(x[.],y[1])->A(x[1],y[2]),A(x[1],y[2])" [label="[0->0];[0->1];[1->0];[1->1]" color="green"];
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"0:A(x[.],y[.]),A(x[.],y[.])->A(x[.],y[1]),A(x[.],y[1])" -> "5:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" [label="[0->0];[0->2];[1->0];[1->2]" color="green"];
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"0:A(x[.],y[.]),A(x[.],y[.])->A(x[.],y[1]),A(x[.],y[1])" -> "7:A(x[.],y[1]),A(x[.],y[1])->A(x[1],y[2]),A(x[1],y[2])" [label="[0->0];[0->1];[1->0];[1->1]" color="green"];
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"0:A(x[.],y[.]),A(x[.],y[.])->A(x[.],y[1]),A(x[.],y[1])" -> "9:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" [label="[0->0];[0->2];[1->0];[1->2]" color="green"];
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"1:A(x[.],y[.]),A(x[.],y[.])->A(x[1],y[.]),A(x[1],y[.])" -> "2:A(x[1],y[.]),A(x[1],y[.])->A(x[2],y[1]),A(x[2],y[1])" [label="[0->0];[0->1];[1->0];[1->1]" color="green"];
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"1:A(x[.],y[.]),A(x[.],y[.])->A(x[1],y[.]),A(x[1],y[.])" -> "4:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" [label="[0->0];[0->1];[1->0];[1->1]" color="green"];
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"1:A(x[.],y[.]),A(x[.],y[.])->A(x[1],y[.]),A(x[1],y[.])" -> "6:A(x[1],y[.]),A(x[1],y[.])->A(x[2],y[1]),A(x[2],y[1])" [label="[0->0];[0->1];[1->0];[1->1]" color="green"];
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"1:A(x[.],y[.]),A(x[.],y[.])->A(x[1],y[.]),A(x[1],y[.])" -> "8:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" [label="[0->0];[0->1];[1->0];[1->1]" color="green"];
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"2:A(x[1],y[.]),A(x[1],y[.])->A(x[2],y[1]),A(x[2],y[1])" -> "Trimer" [label="[0->0];[0->1];[1->0];[1->1]" color="green"];
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"3:A(x[.],y[1]),A(x[.],y[1])->A(x[1],y[2]),A(x[1],y[2])" -> "Trimer" [label="[0->0];[0->1];[1->0];[1->1]" color="green"];
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"4:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" -> "5:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" [label="[0->2];[2->0]" color="green"];
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"4:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" -> "9:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" [label="[0->2];[2->0]" color="green"];
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"5:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" -> "4:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" [label="[0->1];[1->0]" color="green"];
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"5:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" -> "8:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" [label="[0->1];[1->0]" color="green"];
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"6:A(x[1],y[.]),A(x[1],y[.])->A(x[2],y[1]),A(x[2],y[1])" -> "Trimer" [label="[0->0];[0->1];[1->0];[1->1]" color="green"];
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"7:A(x[.],y[1]),A(x[.],y[1])->A(x[1],y[2]),A(x[1],y[2])" -> "Trimer" [label="[0->0];[0->1];[1->0];[1->1]" color="green"];
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"8:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" -> "5:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" [label="[0->2];[2->0]" color="green"];
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"8:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" -> "9:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" [label="[0->2];[2->0]" color="green"];
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"9:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" -> "4:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" [label="[0->1];[1->0]" color="green"];
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"9:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" -> "8:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" [label="[0->1];[1->0]" color="green"];
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"0:A(x[.],y[.]),A(x[.],y[.])->A(x[.],y[1]),A(x[.],y[1])" -> "0:A(x[.],y[.]),A(x[.],y[.])->A(x[.],y[1]),A(x[.],y[1])" [label="[0->1];[1->0]" color="red" arrowhead="tee"];
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"0:A(x[.],y[.]),A(x[.],y[.])->A(x[.],y[1]),A(x[.],y[1])" -> "1:A(x[.],y[.]),A(x[.],y[.])->A(x[1],y[.]),A(x[1],y[.])" [label="[0->0];[0->1];[1->0];[1->1]" color="red" arrowhead="tee"];
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"0:A(x[.],y[.]),A(x[.],y[.])->A(x[.],y[1]),A(x[.],y[1])" -> "4:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" [label="[0->2];[1->2]" color="red" arrowhead="tee"];
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"0:A(x[.],y[.]),A(x[.],y[.])->A(x[.],y[1]),A(x[.],y[1])" -> "8:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" [label="[0->2];[1->2]" color="red" arrowhead="tee"];
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"1:A(x[.],y[.]),A(x[.],y[.])->A(x[1],y[.]),A(x[1],y[.])" -> "0:A(x[.],y[.]),A(x[.],y[.])->A(x[.],y[1]),A(x[.],y[1])" [label="[0->0];[0->1];[1->0];[1->1]" color="red" arrowhead="tee"];
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"1:A(x[.],y[.]),A(x[.],y[.])->A(x[1],y[.]),A(x[1],y[.])" -> "1:A(x[.],y[.]),A(x[.],y[.])->A(x[1],y[.]),A(x[1],y[.])" [label="[0->1];[1->0]" color="red" arrowhead="tee"];
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"1:A(x[.],y[.]),A(x[.],y[.])->A(x[1],y[.]),A(x[1],y[.])" -> "5:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" [label="[0->1];[1->1]" color="red" arrowhead="tee"];
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"1:A(x[.],y[.]),A(x[.],y[.])->A(x[1],y[.]),A(x[1],y[.])" -> "9:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" [label="[0->1];[1->1]" color="red" arrowhead="tee"];
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"2:A(x[1],y[.]),A(x[1],y[.])->A(x[2],y[1]),A(x[2],y[1])" -> "2:A(x[1],y[.]),A(x[1],y[.])->A(x[2],y[1]),A(x[2],y[1])" [label="[0->1];[1->0]" color="red" arrowhead="tee"];
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"2:A(x[1],y[.]),A(x[1],y[.])->A(x[2],y[1]),A(x[2],y[1])" -> "4:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" [label="[0->0];[0->2];[1->0];[1->2]" color="red" arrowhead="tee"];
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"2:A(x[1],y[.]),A(x[1],y[.])->A(x[2],y[1]),A(x[2],y[1])" -> "6:A(x[1],y[.]),A(x[1],y[.])->A(x[2],y[1]),A(x[2],y[1])" [label="[0->0];[0->1];[1->0];[1->1]" color="red" arrowhead="tee"];
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"2:A(x[1],y[.]),A(x[1],y[.])->A(x[2],y[1]),A(x[2],y[1])" -> "8:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" [label="[0->0];[0->2];[1->0];[1->2]" color="red" arrowhead="tee"];
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"3:A(x[.],y[1]),A(x[.],y[1])->A(x[1],y[2]),A(x[1],y[2])" -> "3:A(x[.],y[1]),A(x[.],y[1])->A(x[1],y[2]),A(x[1],y[2])" [label="[0->1];[1->0]" color="red" arrowhead="tee"];
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"3:A(x[.],y[1]),A(x[.],y[1])->A(x[1],y[2]),A(x[1],y[2])" -> "5:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" [label="[0->0];[0->1];[1->0];[1->1]" color="red" arrowhead="tee"];
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"3:A(x[.],y[1]),A(x[.],y[1])->A(x[1],y[2]),A(x[1],y[2])" -> "7:A(x[.],y[1]),A(x[.],y[1])->A(x[1],y[2]),A(x[1],y[2])" [label="[0->0];[0->1];[1->0];[1->1]" color="red" arrowhead="tee"];
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"3:A(x[.],y[1]),A(x[.],y[1])->A(x[1],y[2]),A(x[1],y[2])" -> "9:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" [label="[0->0];[0->1];[1->0];[1->1]" color="red" arrowhead="tee"];
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"4:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" -> "0:A(x[.],y[.]),A(x[.],y[.])->A(x[.],y[1]),A(x[.],y[1])" [label="[2->0];[2->1]" color="red" arrowhead="tee"];
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"4:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" -> "1:A(x[.],y[.]),A(x[.],y[.])->A(x[1],y[.]),A(x[1],y[.])" [label="[2->0];[2->1]" color="red" arrowhead="tee"];
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"4:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" -> "2:A(x[1],y[.]),A(x[1],y[.])->A(x[2],y[1]),A(x[2],y[1])" [label="[0->0];[0->1];[2->0];[2->1]" color="red" arrowhead="tee"];
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"4:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" -> "4:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" [label="[0->2];[2->0]" color="red" arrowhead="tee"];
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"4:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" -> "6:A(x[1],y[.]),A(x[1],y[.])->A(x[2],y[1]),A(x[2],y[1])" [label="[0->0];[0->1];[2->0];[2->1]" color="red" arrowhead="tee"];
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"4:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" -> "8:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" [label="[0->0];[0->2];[2->0];[2->2]" color="red" arrowhead="tee"];
65+
"5:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" -> "0:A(x[.],y[.]),A(x[.],y[.])->A(x[.],y[1]),A(x[.],y[1])" [label="[1->0];[1->1]" color="red" arrowhead="tee"];
66+
"5:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" -> "1:A(x[.],y[.]),A(x[.],y[.])->A(x[1],y[.]),A(x[1],y[.])" [label="[1->0];[1->1]" color="red" arrowhead="tee"];
67+
"5:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" -> "3:A(x[.],y[1]),A(x[.],y[1])->A(x[1],y[2]),A(x[1],y[2])" [label="[0->0];[0->1];[1->0];[1->1]" color="red" arrowhead="tee"];
68+
"5:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" -> "5:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" [label="[0->1];[1->0]" color="red" arrowhead="tee"];
69+
"5:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" -> "7:A(x[.],y[1]),A(x[.],y[1])->A(x[1],y[2]),A(x[1],y[2])" [label="[0->0];[0->1];[1->0];[1->1]" color="red" arrowhead="tee"];
70+
"5:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" -> "9:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" [label="[0->0];[0->1];[1->0];[1->1]" color="red" arrowhead="tee"];
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"6:A(x[1],y[.]),A(x[1],y[.])->A(x[2],y[1]),A(x[2],y[1])" -> "2:A(x[1],y[.]),A(x[1],y[.])->A(x[2],y[1]),A(x[2],y[1])" [label="[0->0];[0->1];[1->0];[1->1]" color="red" arrowhead="tee"];
72+
"6:A(x[1],y[.]),A(x[1],y[.])->A(x[2],y[1]),A(x[2],y[1])" -> "4:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" [label="[0->0];[0->2];[1->0];[1->2]" color="red" arrowhead="tee"];
73+
"6:A(x[1],y[.]),A(x[1],y[.])->A(x[2],y[1]),A(x[2],y[1])" -> "6:A(x[1],y[.]),A(x[1],y[.])->A(x[2],y[1]),A(x[2],y[1])" [label="[0->1];[1->0]" color="red" arrowhead="tee"];
74+
"6:A(x[1],y[.]),A(x[1],y[.])->A(x[2],y[1]),A(x[2],y[1])" -> "8:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" [label="[0->0];[0->2];[1->0];[1->2]" color="red" arrowhead="tee"];
75+
"7:A(x[.],y[1]),A(x[.],y[1])->A(x[1],y[2]),A(x[1],y[2])" -> "3:A(x[.],y[1]),A(x[.],y[1])->A(x[1],y[2]),A(x[1],y[2])" [label="[0->0];[0->1];[1->0];[1->1]" color="red" arrowhead="tee"];
76+
"7:A(x[.],y[1]),A(x[.],y[1])->A(x[1],y[2]),A(x[1],y[2])" -> "5:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" [label="[0->0];[0->1];[1->0];[1->1]" color="red" arrowhead="tee"];
77+
"7:A(x[.],y[1]),A(x[.],y[1])->A(x[1],y[2]),A(x[1],y[2])" -> "7:A(x[.],y[1]),A(x[.],y[1])->A(x[1],y[2]),A(x[1],y[2])" [label="[0->1];[1->0]" color="red" arrowhead="tee"];
78+
"7:A(x[.],y[1]),A(x[.],y[1])->A(x[1],y[2]),A(x[1],y[2])" -> "9:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" [label="[0->0];[0->1];[1->0];[1->1]" color="red" arrowhead="tee"];
79+
"8:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" -> "0:A(x[.],y[.]),A(x[.],y[.])->A(x[.],y[1]),A(x[.],y[1])" [label="[2->0];[2->1]" color="red" arrowhead="tee"];
80+
"8:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" -> "1:A(x[.],y[.]),A(x[.],y[.])->A(x[1],y[.]),A(x[1],y[.])" [label="[2->0];[2->1]" color="red" arrowhead="tee"];
81+
"8:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" -> "2:A(x[1],y[.]),A(x[1],y[.])->A(x[2],y[1]),A(x[2],y[1])" [label="[0->0];[0->1];[2->0];[2->1]" color="red" arrowhead="tee"];
82+
"8:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" -> "4:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" [label="[0->0];[0->2];[2->0];[2->2]" color="red" arrowhead="tee"];
83+
"8:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" -> "6:A(x[1],y[.]),A(x[1],y[.])->A(x[2],y[1]),A(x[2],y[1])" [label="[0->0];[0->1];[2->0];[2->1]" color="red" arrowhead="tee"];
84+
"8:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" -> "8:A(x[1],y[.]),A(x[1]),A(y[.])->A(x[2],y[1]),A(x[2]),A(y[1])" [label="[0->2];[2->0]" color="red" arrowhead="tee"];
85+
"9:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" -> "0:A(x[.],y[.]),A(x[.],y[.])->A(x[.],y[1]),A(x[.],y[1])" [label="[1->0];[1->1]" color="red" arrowhead="tee"];
86+
"9:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" -> "1:A(x[.],y[.]),A(x[.],y[.])->A(x[1],y[.]),A(x[1],y[.])" [label="[1->0];[1->1]" color="red" arrowhead="tee"];
87+
"9:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" -> "3:A(x[.],y[1]),A(x[.],y[1])->A(x[1],y[2]),A(x[1],y[2])" [label="[0->0];[0->1];[1->0];[1->1]" color="red" arrowhead="tee"];
88+
"9:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" -> "5:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" [label="[0->0];[0->1];[1->0];[1->1]" color="red" arrowhead="tee"];
89+
"9:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" -> "7:A(x[.],y[1]),A(x[.],y[1])->A(x[1],y[2]),A(x[1],y[2])" [label="[0->0];[0->1];[1->0];[1->1]" color="red" arrowhead="tee"];
90+
"9:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" -> "9:A(x[.],y[1]),A(x[.]),A(y[1])->A(x[1],y[2]),A(x[1]),A(y[2])" [label="[0->1];[1->0]" color="red" arrowhead="tee"];
91+
}

tests/integration/boolean_parameters/sequential_bond/output/LOG.ref

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@@ -9,8 +9,8 @@ Reachability analysis...
99
------------------------------------------------------------
1010
* There are some non applyable rules
1111
------------------------------------------------------------
12+
rule 'seq_bond_0 (File "example_sequential_bond.ka", line 10, characters 0-40:) could be applied if @sq-A-x-y.
1213
rule File "example_sequential_bond.ka", line 10, characters 0-40: could be applied if ~@sq-A-x-y.
13-
rule File "example_sequential_bond.ka", line 10, characters 0-40: could be applied if @sq-A-x-y.
1414
------------------------------------------------------------
1515
every agent may occur in the model
1616

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1+
#Command-line:
2+
"${KAPPABIN}"KaSa example_site_across_bonds.ka --output-directory output --debugging-mode -syntax 4 || exit 0

tests/integration/boolean_parameters/site_across_bond/example_site_across_bounds.ka renamed to tests/integration/boolean_parameters/site_across_bond/example_site_across_bonds.ka

File renamed without changes.
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1+
#Command-line:
2+
"${KAPPABIN}"KaSa example_views.ka --output-directory output --debugging-mode -syntax 4 || exit 0
3+
"${KAPPABIN}"KaSim example_views.ka -l 2000 -d output -p 20 -syntax 4 -seed 858703540 || exit 0

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