Fix import

labkey-jeckels · labkey-jeckels · commit 5386373d367e · 2025-11-04T09:03:14.000-08:00
diff --git a/ehr/src/org/labkey/ehr/pipeline/GeneticCalculationsImportTask.java b/ehr/src/org/labkey/ehr/pipeline/GeneticCalculationsImportTask.java
@@ -249,7 +249,7 @@ else if (kinshipTable.getSqlDialect().isPostgreSQL())
             }
 
             try (DbScope.Transaction transaction = ExperimentService.get().ensureTransaction();
-                 BufferedReader reader = Readers.getReader(output.getParent().openInputStream());
+                 BufferedReader reader = Readers.getReader(output.openInputStream());
                  PreparedStatement stmt = transaction.getConnection().prepareStatement(
                     "INSERT INTO " + EHRSchema.EHR_SCHEMANAME + ".kinship\n" +
                             "\t(Id, Id2, coefficient, container, created, createdby, modified, modifiedby)\n" +

Original file line number	Diff line number	Diff line change
`@@ -249,7 +249,7 @@ else if (kinshipTable.getSqlDialect().isPostgreSQL())`
`249`	`249`	`}`
`250`	`250`
`251`	`251`	`try (DbScope.Transaction transaction = ExperimentService.get().ensureTransaction();`
`252`		`- BufferedReader reader = Readers.getReader(output.getParent().openInputStream());`
	`252`	`+ BufferedReader reader = Readers.getReader(output.openInputStream());`
`253`	`253`	`PreparedStatement stmt = transaction.getConnection().prepareStatement(`
`254`	`254`	`"INSERT INTO " + EHRSchema.EHR_SCHEMANAME + ".kinship\n" +`
`255`	`255`	`"\t(Id, Id2, coefficient, container, created, createdby, modified, modifiedby)\n" +`