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kollilkollil
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Added new functionality to the weights data
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+336
-143
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‎onprc_ehr/resources/queries/study/Demographics_NotInMMA.query.xml‎

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<query xmlns="http://labkey.org/data/xml/query">
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<metadata>
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<tables xmlns="http://labkey.org/data/xml">
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<table tableName="Demographics_NotInMMA" tableDbType="NOT_IN_DB">
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<tableTitle>Animals not in weight management regimen</tableTitle>
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</table>
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</tables>
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</metadata>
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</query>

‎onprc_ehr/resources/queries/study/Demographics_NotInMMA.sql‎

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/*
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Created by Kollil in Dec 2025
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Tkt # 13461
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Added two filters to the Demographics dataset:
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1. Filter out any animal with the following SNOMED Codes:
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Begin active weight management regimen (P-YY961)
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However, we would need to include animals that have this additional SNOMED Code if it's entered AFTER the one above
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Release from active weight management regimen (P-YY960)
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2. Remove Shelters, Corral and Hospital locations from the lists
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*/
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Select
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d.Id.curlocation.area as Area,
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d.Id.curlocation.room as Room,
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d.Id.curlocation.cage as Cage,
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d.Id,
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d.Id.utilization.use as ProjectsAndGroups,
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d.species,
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d.geographic_origin,
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d.gender as Sex,
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d.calculated_status,
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d.birth,
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d.Id.Age.YearAndDays,
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d.Id.MostRecentWeight.MostRecentWeight,
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d.Id.MostRecentWeight.MostRecentWeightDate,
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d.Id.viral_status.viralStatus,
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d.history
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From Demographics d
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Where d.Id Not In (
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SELECT DISTINCT t.Id
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FROM study.WeightManagementMMAData t
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WHERE NOT EXISTS (
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-- Find animals whose latest 'Weight MMA BEGIN' has no later 'Weight MMA RELEASE'
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SELECT 1
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FROM study.WeightManagementMMAData b
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WHERE b.Id = t.Id
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AND b.code = 'P-YY961'
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AND b.date = (SELECT MAX(b2.date)
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FROM study.WeightManagementMMAData b2
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WHERE b2.Id = t.Id
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AND b2.code = 'P-YY961')
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AND NOT EXISTS (SELECT 1
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FROM study.WeightManagementMMAData r
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WHERE r.Id = t.Id
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AND r.code = 'P-YY960'
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AND r.date > b.date))
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)
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AND d.Id.curlocation.area NOT IN ('Shelters', 'Corral', 'Hospital')-- Exclude animals from these locations

‎onprc_ehr/resources/queries/study/weightRelChange_NotInMMA.query.xml‎

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<query xmlns="http://labkey.org/data/xml/query">
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<metadata>
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<tables xmlns="http://labkey.org/data/xml">
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<table tableName="weightRelChange_NotInMMA" tableDbType="NOT_IN_DB">
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<tableTitle>Animals(Not in Weight Management Regimen) with Weight Change, Relative to Current Weight</tableTitle>
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<description>This query shows the percent change of each weight, relative to the current weight</description>
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<columns>
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<column columnName="lsid">
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<isKeyField>true</isKeyField>
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<isHidden>true</isHidden>
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</column>
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<column columnName="Id">
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<isHidden>true</isHidden>
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<fk>
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<fkDbSchema>study</fkDbSchema>
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<fkTable>animal</fkTable>
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<fkColumnName>id</fkColumnName>
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</fk>
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</column>
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<column columnName="date">
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<isHidden>true</isHidden>
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<columnTitle>Date of Last Weight</columnTitle>
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</column>
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<column columnName="weight">
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<columnTitle>Old Weight (kg)</columnTitle>
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</column>
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<column columnName="PctChange">
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<columnTitle>% Change Relative To Current</columnTitle>
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<conditionalFormats>
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<conditionalFormat>
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<filters>
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<filter operator="lte" value="-10"/>
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</filters>
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<bold>true</bold>
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<backgroundColor>FF0000</backgroundColor>
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</conditionalFormat>
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<conditionalFormat>
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<filters>
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<filter operator="gte" value="10"/>
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</filters>
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<bold>true</bold>
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<backgroundColor>458B00</backgroundColor>
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</conditionalFormat>
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</conditionalFormats>
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</column>
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<column columnName="IntervalInDays">
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<columnTitle>Days Since Weight</columnTitle>
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</column>
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<column columnName="IntervalInMonths">
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<columnTitle>Months Since Weight</columnTitle>
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</column>
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<column columnName="LatestWeight">
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<columnTitle>Latest Weight (kg)</columnTitle>
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<url>/query/executeQuery.view?schemaName=study&amp;
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query.queryName=weight&amp;
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query.date~eq=${LatestWeightDate}&amp;
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query.sort=-date
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</url>
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</column>
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<column columnName="LatestWeightDate">
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<columnTitle>Latest Weight Date</columnTitle>
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</column>
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</columns>
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<titleColumn>PctChange</titleColumn>
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</table>
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</tables>
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</metadata>
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</query>

‎onprc_ehr/resources/queries/study/weightRelChange_NotInMMA.sql‎

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/*
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Created by Kollil in Dec 2025
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Tkt # 13461
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This query is the ONPRC version of the core LK EHR query called, weightRelChange. In addition to the original one, this new query has two filters:
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1. Filter out any animal with the following SNOMED Codes:
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Begin active weight management regimen (P-YY961)
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However, we would need to include animals that have this additional SNOMED Code if it's entered AFTER the one above
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Release from active weight management regimen (P-YY960)
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2. Remove Shelters, Corral and Hospital locations from the lists
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*/
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SELECT
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w.lsid,
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w.Id,
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w.date,
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w.Id.MostRecentWeight.MostRecentWeightDate as LatestWeightDate,
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w.Id.MostRecentWeight.MostRecentWeight AS LatestWeight,
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timestampdiff('SQL_TSI_DAY', w.date, w.Id.MostRecentWeight.MostRecentWeightDate) AS IntervalInDays,
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age_in_months(w.date, w.Id.MostRecentWeight.MostRecentWeightDate) AS IntervalInMonths,
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w.weight,
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CASE WHEN w.date >= timestampadd('SQL_TSI_DAY', -730, w.Id.MostRecentWeight.MostRecentWeightDate) THEN
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Round(((w.Id.MostRecentWeight.MostRecentWeight - w.weight) * 100 / w.weight), 1)
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ELSE
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null
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END AS PctChange,
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CASE WHEN w.date >= timestampadd('SQL_TSI_DAY', -730, w.Id.MostRecentWeight.MostRecentWeightDate) THEN
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Abs(Round(((w.Id.MostRecentWeight.MostRecentWeight - w.weight) * 100 / w.weight), 1))
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else
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null
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END AS AbsPctChange,
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w.qcstate
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FROM study.weight w
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WHERE w.qcstate.publicdata = true
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AND w.Id NOT IN
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(SELECT DISTINCT t.Id
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FROM study.WeightManagementMMAData t
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WHERE NOT EXISTS
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(
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-- Find animals whose latest 'Weight MMA BEGIN' has no later 'Weight MMA RELEASE'
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SELECT 1
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FROM study.WeightManagementMMAData b
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WHERE b.Id = t.Id
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AND b.code = 'P-YY961'
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AND b.date = (SELECT MAX(b2.date)
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FROM study.WeightManagementMMAData b2
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WHERE b2.Id = t.Id
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AND b2.code = 'P-YY961')
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AND NOT EXISTS (SELECT 1
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FROM study.WeightManagementMMAData r
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WHERE r.Id = t.Id
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AND r.code = 'P-YY960'
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AND r.date > b.date)
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)
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)
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-- Exclude animals from these locations
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AND w.Id.curlocation.area NOT IN ('Shelters', 'Corral', 'Hospital')

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