Minus80/pyproject.toml at main · LinkageIO/Minus80 · GitHub

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[project]
name = "minus80"
dynamic = ["version"]
description = "A library for freezing, unfreezing and storing biological data."
readme = "README.md"
requires-python = ">=3.12"
license = "MIT"
keywords = []
authors = [
    { name = "Rob Schaefer", email = "rob@linkage.io" },
]
classifiers = [
  "Development Status :: 4 - Beta",
  "Programming Language :: Python",
  "Programming Language :: Python :: 3.10",
  "Programming Language :: Python :: 3.11",
  "Programming Language :: Python :: 3.12",
  "Programming Language :: Python :: Implementation :: CPython",
  "Programming Language :: Python :: Implementation :: PyPy",
]

dependencies = [
  "aiosqlite>=0.16.1",
  "google-cloud >= 0.34.0",
  "google-cloud-storage >= 1.17.0",
  "google-cloud-kms >= 1.2.1",
  "pandas>=3.0.0",
  "pyarrow>=23.0.0",
  "tinydb>=3.13.0",
  "h5py >= 2.9.0",
  "termcolor >= 1.1.0",
  "pyyaml >= 5.1.2",
  "click >= 7.0",
  "asyncssh >= 1.17.1",
  "aiohttp >= 3.6.1",
  "aiofiles >= 0.4.0",
  "networkx == 1.11",
  "urllib3 >= 1.24.2",
  "pyrebase4 >=4.3.0",
  "fuzzywuzzy >= 0.17.0",
  "python-Levenshtein >= 0.12.0",
  "tqdm >= 4.32.2",
  "backoff >= 1.8.0",
  "apsw >= 3.51.0",
]

[project.optional-dependencies]
# Trying to use "compatible release" version specifiers
# https://packaging.python.org/en/latest/specifications/version-specifiers/#id5

dev = [
    "assertpy ~= 1.1",
    "autoflake ~= 2.3",
    "black ~= 23.1",
    "ipdb>=0.13.13",
    "isort>=5.10",
    "pydocstyle>=6.0",
    # test deps
    "coverage[toml]>=6.5",
    "pytest >= 8.3.5",
    "pytest-cov",
    "pytest-xprocess>=1.0.2",
	"setuptools==80.9.0"
]

[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[tool.hatch.metadata]
allow-direct-references = true  # allows us using packages with git+ssh URLs

[tool.hatch.envs.default]
path = ".hatch"
features = ["dev"]
# python = "3.12" # Uncomment the following if you want to force python 3.12 for dev (and not automatically go to 3.13)

[project.urls]
Documentation = "https://github.com/LinkageIO/minus80.git"
Issues = "https://github.com/LinkageIO/minus80.git"
Source = "https://github.com/LinkageIO/minus80.git"

[project.scripts]
minus80 = "minus80.cli.minus80:cli"

[tool.hatch.version]
path = "minus80/__about__.py"

[tool.hatch.envs.default.scripts]
test = "pytest {args:tests}"
test-cov = "coverage run -m pytest {args:tests}"
cov-report = [
  "- coverage combine",
  "coverage report",
]
cov = [
  "test-cov",
  "cov-report",
]

[[tool.hatch.envs.test.matrix]]
python = ["3.13"]

[tool.hatch.envs.types]
dependencies = [
  "mypy>=1.0.0",
]
[tool.hatch.envs.types.scripts]
check = "mypy --install-types --non-interactive {args:minus80 tests}"

[tool.coverage.run]
source_pkgs = ["minus80", "tests"]
branch = true
parallel = true
omit = [
  "minus80/__about__.py",
  "tests/*",
]

[tool.coverage.paths]
minus80 = ["minus80"]
tests = ["tests" ]

[tool.coverage.report]
exclude_lines = [
  "no cov",
  "if __name__ == .__main__.:",
  "if TYPE_CHECKING:",
]