Given a newly implemented parallelization (https://docs.mdanalysis.org/dev/documentation_pages/analysis/parallelization.html), implement it for all classes in analysis.hydrogenbonds.WaterBridgeAnalysis module. You may use analysis.RMSD in develop as a reference.
You need to add:
- appropriate implementation of result aggregation for AnalysisBase subclasses in
analysis.hydrogenbonds.WaterBridgeAnalysis module (or explicitly limit available backends if the classes aren't parallelizable)
- a boilerplate fixture(s) to
testsuite/analysis/conftest.py, analogous with existing ones
- a
client_... fixtures to all tests using in testsuite/MDAnalysisTests/analysis/test_waterdynamics.py, and modify the way run() method is called
Given a newly implemented parallelization (https://docs.mdanalysis.org/dev/documentation_pages/analysis/parallelization.html), implement it for all classes in
analysis.hydrogenbonds.WaterBridgeAnalysismodule. You may useanalysis.RMSDindevelopas a reference.You need to add:
analysis.hydrogenbonds.WaterBridgeAnalysismodule (or explicitly limit available backends if the classes aren't parallelizable)testsuite/analysis/conftest.py, analogous with existing onesclient_...fixtures to all tests using intestsuite/MDAnalysisTests/analysis/test_waterdynamics.py, and modify the way run() method is called