Ir 233 validate all (#96)

* Add pip-audit and update dependencies

* IR-233 validate all

Why these changes are being introduced:
* Add CLI command to validate all AIPs in a given AWS environment

How this addresses that need:
* Add validate-all CLI command and corresponding CLI test
* Add logging statement to bulk-validate CLI command and update corresponding CLI tests

Side effects of this change:
* None

Relevant ticket(s):
* https://mitlibraries.atlassian.net/browse/IR-233

* Updates based on discussion in PR # 96

* Add bulk-validate args to validate-all
* Remove unnecessary .seek() call

Author: ehanson8

.pre-commit-config.yaml

@@ -22,8 +22,8 @@ repos:
         language: system
         pass_filenames: true
         types: ["python"]
-      - id: safety
-        name: safety
-        entry: pipenv check
+      - id: pip-audit
+        name: pip-audit
+        entry: pipenv run pip-audit
         language: system
         pass_filenames: false

Makefile

@@ -93,7 +93,7 @@ ruff: # Run 'ruff' linter and print a preview of errors
 	pipenv run ruff check .
 
 safety: # Check for security vulnerabilities and verify Pipfile.lock is up-to-date
-	pipenv check --auto-install
+	pipenv run pip-audit
 	pipenv verify
 
 lint-apply: black-apply ruff-apply # Apply changes with 'black' and resolve 'fixable errors' with 'ruff'

Pipfile

@@ -18,13 +18,14 @@ coveralls = "*"
 ipython = "*"
 mypy = "*"
 pandas-stubs = "*"
+pip-audit = "*"
 pre-commit = "*"
 pytest = "*"
 pytest-mock = "*"
+pytest-reraise = "*"
 ruff = "*"
 setuptools = "*"
 types-requests = "*"
-pytest-reraise = "*"
 
 [requires]
 python_version = "3.12"