COSICC/NAMESPACE at main · MarioniLab/COSICC · GitHub

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# Generated by roxygen2: do not edit by hand

export(COSICC_DA_group)
export(COSICC_DA_lineage)
export(COSICC_kinetics)
export(compute_and_plot_pseudotime)
export(find_dynamic_genes)
export(simulate_sce)
export(simulate_sce_kinetics)
export(simulate_seurat)
import(SingleCellExperiment)
import(dplyr)
import(ggplot2)
import(ggthemes)
import(scater)
import(scran)
import(splatter)
importFrom(Seurat,CreateSeuratObject)
importFrom(Seurat,FindVariableFeatures)
importFrom(Seurat,NormalizeData)
importFrom(Seurat,RunPCA)
importFrom(Seurat,RunUMAP)
importFrom(Seurat,ScaleData)
importFrom(SummarizedExperiment,colData)
importFrom(destiny,DiffusionMap)
importFrom(destiny,eigenvectors)
importFrom(ggrepel,geom_text_repel)
importFrom(scales,pseudo_log_trans)
importFrom(scater,logNormCounts)
importFrom(scater,runPCA)
importFrom(scater,runUMAP)
importFrom(splatter,splatSimulate)
importFrom(splatter,splatSimulatePaths)
importFrom(stats,complete.cases)
importFrom(stats,cor)
importFrom(stats,fisher.test)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,p.adjust)
importFrom(stats,runif)
importFrom(stats,wilcox.test)